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NC_055851.1__YP_010108638.1__KNV09_gp013__00013

Bact-Vir

Identity

Accession:: NC_055851 ↗
Kingdom:: phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Thalassavirus› Vibrio_phage_Athena

TaxID: 2736262

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-50

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3c8tA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.65	55.0	4.38e-01	100.0%	70.1%
1bcrA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.65	54.0	3.43e-01	100.0%	18.5%
1td6A03	1.10.472.40	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3	0.63	52.0	4.30e-01	100.0%	62.0%
2g8lA02	1.10.285.20	Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2	0.62	52.0	4.74e-01	100.0%	84.6%
2fzlA02	6.10.140.1180	Special › Helix non-globular › Helix Hairpins ›	0.59	40.0	3.71e-01	73.3%	80.6%
2kp7A01	1.10.150.110	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like	0.59	45.0	3.80e-01	82.2%	94.6%
2rfqC03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.59	45.0	3.20e-01	95.6%	49.7%
4kjmB01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.59	49.0	4.44e-01	95.6%	77.8%
6umqA01	1.20.930.60	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A ›	0.56	46.0	3.54e-01	97.8%	87.8%
4azcA02	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.55	44.0	4.12e-01	93.3%	81.4%
5nl9A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	45.0	3.76e-01	100.0%	98.8%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3744257	2.1.1.228 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_bind	0.74	63.0	5.32e-01	100.0%	72.5%
4040148	186.1.1.1 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1	0.68	54.0	4.34e-01	95.6%	81.0%
3961272	632.3.1.9 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › DUF1707	0.67	53.0	5.32e-01	93.3%	100.0%
4008705	186.1.1.1 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1	0.67	56.0	4.23e-01	97.8%	70.4%
3955218	632.2.1.17 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1707	0.66	53.0	5.32e-01	97.8%	95.6%
3952457	632.2.1.17 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1707	0.65	52.0	4.97e-01	97.8%	85.5%
5078343	632.3.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain	0.63	50.0	4.67e-01	100.0%	71.9%
3736440	103.1.1.14 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4	0.60	45.0	4.59e-01	100.0%	91.1%
3467737	7579.1.1.5 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10	0.60	43.0	2.49e-01	77.8%	26.7%