←Back to structures
NC_055854.1__YP_010109012.1__KNV12_gp17__00017
Bact-VirNC_055854.1__YP_010109012.1__KNV12_gp17__00017
Identity
- Accession:
- NC_055854 ↗
- Kingdom:
- phage
Quality
94.5
mean pLDDT
Taxonomy
TaxID: 2743829
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-57
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wadA01 | 6.20.70.10 | Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › | 0.76 | 39.0 | 4.93e-01 | 70.4% | 90.0% |
| 2fclA00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.66 | 52.0 | 3.84e-01 | 90.7% | 42.9% |
| 1s68A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.66 | 51.0 | 4.09e-01 | 87.0% | 50.4% |
| 1j9aA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.64 | 55.0 | 3.87e-01 | 100.0% | 56.0% |
| 4ecnA01 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.63 | 49.0 | 4.00e-01 | 85.2% | 81.6% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 44.0 | 3.34e-01 | 77.8% | 38.1% |
| 1wljA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 50.0 | 3.67e-01 | 100.0% | 83.3% |
| 3my2A00 | 2.60.450.10 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain | 0.60 | 47.0 | 3.65e-01 | 88.9% | 65.9% |
| 1gp1A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 48.0 | 3.34e-01 | 90.7% | 84.2% |
| 1wp0A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 42.0 | 3.12e-01 | 79.6% | 77.5% |
| 2dkhA03 | 3.40.30.20 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Phenol hydroxylase, C-terminal dimerisation domain | 0.58 | 44.0 | 2.99e-01 | 85.2% | 84.5% |
| 3drnB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 44.0 | 3.25e-01 | 85.2% | 74.7% |
| 2gs3A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 45.0 | 3.25e-01 | 90.7% | 77.2% |
| 2o1qA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 40.0 | 3.10e-01 | 77.8% | 92.1% |
| 5bpxA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 40.0 | 2.92e-01 | 75.9% | 54.2% |
| 2b7jB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 44.0 | 3.21e-01 | 90.7% | 79.6% |
| 4eo3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 44.0 | 3.33e-01 | 90.7% | 79.7% |
| 3eytB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 44.0 | 3.24e-01 | 90.7% | 77.3% |
| 1qqhA00 | 2.170.200.10 | Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain | 0.55 | 41.0 | 3.12e-01 | 85.2% | 63.9% |
| 2ls5A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 43.0 | 3.20e-01 | 90.7% | 72.3% |
| 2yh9B00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.54 | 37.0 | 3.41e-01 | 72.2% | 55.9% |
| 4gqcA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 43.0 | 3.18e-01 | 92.6% | 78.8% |
| 6jwfA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 41.0 | 2.53e-01 | 88.9% | 33.2% |
| 2p0wA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 46.0 | 3.48e-01 | 98.1% | 47.4% |
| 3uepA00 | 2.30.330.10 | Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like | 0.53 | 41.0 | 3.58e-01 | 85.2% | 68.2% |
| 2wfwA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 35.0 | 3.53e-01 | 94.4% | 67.2% |
| 3cxbA02 | 3.30.390.70 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Salmonella typhimurium protein | 0.52 | 40.0 | 3.37e-01 | 90.7% | 83.0% |
| 5epfA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 41.0 | 3.06e-01 | 90.7% | 77.9% |
| 5h8iI00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.52 | 43.0 | 2.75e-01 | 94.4% | 58.0% |
| 3cjxA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 37.0 | 2.79e-01 | 77.8% | 57.3% |
| 3ebrA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 38.0 | 2.79e-01 | 77.8% | 54.5% |
| 4l9bA01 | 2.60.520.10 | Mainly Beta › Sandwich › Triple-stranded beta-helix › Phage fibre proteins | 0.51 | 36.0 | 2.75e-01 | 75.9% | 51.9% |
| 3vskA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.51 | 37.0 | 3.02e-01 | 87.0% | 97.7% |
| 2p9bA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.51 | 42.0 | 3.49e-01 | 98.1% | 51.0% |
| 3tbdA01 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.51 | 34.0 | 3.05e-01 | 72.2% | 94.1% |
| 4aqlA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.50 | 42.0 | 3.29e-01 | 100.0% | 45.8% |
| 3lw6A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 41.0 | 2.78e-01 | 98.1% | 27.4% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1314478 | 809.2.1.1 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like | 0.72 | 37.0 | 3.72e-01 | 72.2% | 46.4% |
| 3508717 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 45.0 | 4.18e-01 | 70.4% | 90.0% |
| 6828 | 316.1.1.21 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit | 0.66 | 52.0 | 3.83e-01 | 90.7% | 42.7% |
| 4995764 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.63 | 48.0 | 3.24e-01 | 87.0% | 28.9% |
| 3941378 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.63 | 49.0 | 4.19e-01 | 90.7% | 71.6% |
| 4945479 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 53.0 | 4.32e-01 | 98.1% | 92.4% |
| 5048115 | 4294.1.1.2 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p | 0.62 | 45.0 | 3.82e-01 | 79.6% | 55.8% |
| 3940442 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.59 | 48.0 | 3.69e-01 | 98.1% | 39.2% |
| 3831218 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.59 | 49.0 | 3.36e-01 | 100.0% | 65.8% |
| 3702172 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.59 | 49.0 | 4.71e-01 | 98.1% | 92.3% |
| 3968026 | 10.12.1.49 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_7 | 0.58 | 41.0 | 2.98e-01 | 75.9% | 53.5% |
| 3253561 | 213.1.1.19 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 | 0.57 | 39.0 | 2.92e-01 | 74.1% | 28.4% |
| 3385710 | 2485.1.1.12 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC | 0.57 | 46.0 | 3.36e-01 | 92.6% | 84.4% |
| 3542803 | 389.1.1.7 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA | 0.56 | 32.0 | 3.30e-01 | 87.0% | 56.0% |
| 3060621 | 389.1.1.5 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Plasmod_Pvs28 | 0.56 | 31.0 | 3.45e-01 | 77.8% | 66.7% |
| 3515806 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 45.0 | 3.56e-01 | 100.0% | 45.2% |
| 4014792 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.55 | 48.0 | 4.02e-01 | 100.0% | 67.4% |
| 3183857 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.55 | 48.0 | 3.84e-01 | 100.0% | 63.6% |
| 3506789 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.55 | 43.0 | 3.22e-01 | 96.3% | 70.9% |
| 3250206 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.55 | 47.0 | 4.28e-01 | 100.0% | 92.0% |
| 4026565 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 38.0 | 3.27e-01 | 72.2% | 60.0% |
| 3872316 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.55 | 36.0 | 2.63e-01 | 72.2% | 21.1% |
| 5033647 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 36.0 | 3.62e-01 | 79.6% | 69.1% |
| 3894531 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.54 | 45.0 | 3.29e-01 | 98.1% | 48.5% |
| 5023921 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.54 | 44.0 | 4.40e-01 | 100.0% | 90.9% |
| 5075568 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.53 | 41.0 | 2.65e-01 | 90.7% | 94.3% |
| 3992247 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.53 | 41.0 | 3.67e-01 | 90.7% | 78.8% |
| 3992248 | 391.1.2.9 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 | 0.53 | 35.0 | 3.65e-01 | 85.2% | 75.5% |
| 3516051 | 389.1.1.1 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF | 0.53 | 31.0 | 3.41e-01 | 90.7% | 72.5% |
| 4287556 | 65.1.1.4 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › HUTI_composite_bact | 0.53 | 45.0 | 4.38e-01 | 98.1% | 96.7% |
| 3256959 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.52 | 44.0 | 4.12e-01 | 98.1% | 97.1% |
| 3733455 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.52 | 45.0 | 3.66e-01 | 100.0% | 64.8% |
| 4014945 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.52 | 44.0 | 4.09e-01 | 100.0% | 92.9% |
| 1872983 | 10.12.1.49 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_7 | 0.52 | 37.0 | 2.73e-01 | 77.8% | 53.1% |
| 1045 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.51 | 42.0 | 4.06e-01 | 98.1% | 83.9% |
| 3330406 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 39.0 | 3.83e-01 | 90.7% | 81.7% |
| 1240179 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.51 | 43.0 | 4.03e-01 | 100.0% | 89.7% |
| 4256769 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.51 | 42.0 | 3.58e-01 | 100.0% | 61.0% |
| 3282636 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.51 | 44.0 | 4.16e-01 | 100.0% | 92.3% |
| 4244646 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.50 | 42.0 | 3.87e-01 | 100.0% | 85.3% |
| 3583042 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.50 | 30.0 | 2.34e-01 | 72.2% | 21.4% |