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NC_055859.1__YP_010109462.1__KNV17_gp08__00008

Bact-Vir

NC_055859.1__YP_010109462.1__KNV17_gp08__00008

Identity

Accession:
NC_055859 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Vividuovirus› Gordonia_phage_Paries

TaxID: 2762413

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 47.0 3.99e-01 70.0% 98.8%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.64 57.0 5.47e-01 98.0% 89.3%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.63 53.0 5.10e-01 100.0% 84.7%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.61 41.0 3.53e-01 70.0% 92.7%
2oauA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 40.0 3.18e-01 70.0% 63.7%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.59 40.0 3.53e-01 70.0% 95.9%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.58 45.0 4.21e-01 90.0% 81.8%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.57 38.0 3.45e-01 70.0% 50.7%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 48.0 3.97e-01 100.0% 59.4%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.55 38.0 3.43e-01 76.0% 50.6%
5c9eB01 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 39.0 3.40e-01 98.0% 48.3%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.52 41.0 3.37e-01 90.0% 75.2%
6j3eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 37.0 2.64e-01 78.0% 32.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024374 4120.1.1.1 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP 0.78 53.0 4.75e-01 72.0% 51.4%
3226769 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 56.0 5.11e-01 100.0% 82.9%
3244328 3340.1.1.0 ↗ extended segments › Helical region in REST corepressor 1 › Helical region in REST corepressor 1 › Helical region in REST corepressor 1 0.64 50.0 4.75e-01 88.0% 73.3%
3736610 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 50.0 4.15e-01 96.0% 55.0%
4567993 632.21.1.2 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › FIVAR 0.59 47.0 4.40e-01 92.0% 89.2%
3380775 650.1.1.10 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › PF30912 0.59 39.0 3.84e-01 70.0% 65.5%
3897399 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.58 39.0 3.42e-01 70.0% 45.0%
3939282 650.1.1.10 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › PF30912 0.58 38.0 3.47e-01 70.0% 48.0%
3457711 3846.1.1.0 ↗ alpha bundles › IcmR › IcmR › IcmR 0.58 41.0 4.00e-01 76.0% 69.1%
3710152 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.57 38.0 3.48e-01 70.0% 51.4%
3705465 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.56 37.0 3.27e-01 70.0% 45.0%
3699724 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.55 37.0 3.37e-01 70.0% 51.4%
3798465 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.55 37.0 3.45e-01 70.0% 55.4%
3968363 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.54 36.0 3.44e-01 70.0% 60.0%
4427313 650.1.1.2 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Pam16 0.53 44.0 3.67e-01 100.0% 85.7%
3610209 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.52 35.0 3.26e-01 70.0% 64.6%
3592487 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.52 36.0 3.01e-01 70.0% 54.4%