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NC_055861.1__YP_010109661.1__KNV19_gp27__00027

Bact-Vir

NC_055861.1__YP_010109661.1__KNV19_gp27__00027

Identity

Accession:
NC_055861 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Wizardvirus› Gordonia_phage_Portcullis

TaxID: 2762414

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-152
PDB
Domain cluster: rep: NC_071004.1__YP_010675483.1__PQD13_gp54__00054__D91-174
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fgxA00 3.30.2220.10 Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 0.78 59.0 6.07e-01 87.9% 83.3%
4y5jA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 38.0 2.88e-01 83.8% 24.7%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 37.0 3.78e-01 79.8% 57.1%
3ltjA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 35.0 2.82e-01 88.9% 26.7%
7v8fB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 46.0 4.80e-01 99.0% 85.9%
1f7cA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.58 50.0 4.12e-01 96.0% 90.1%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 35.0 3.77e-01 79.8% 72.3%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.57 33.0 4.11e-01 84.8% 100.0%
4u04B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 34.0 3.63e-01 94.9% 67.0%
2ee4A01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.56 48.0 3.95e-01 97.0% 91.1%
5jcpB01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.55 47.0 3.84e-01 97.0% 88.2%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.55 32.0 3.95e-01 82.8% 98.3%
2cfoA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 41.0 4.05e-01 80.8% 98.1%
2qeuB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.54 34.0 3.10e-01 80.8% 45.9%
3iugB00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.53 46.0 3.77e-01 97.0% 90.9%
3kuqA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.53 45.0 3.74e-01 98.0% 92.2%
5z7cA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 44.0 3.69e-01 98.0% 77.3%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 40.0 3.52e-01 84.8% 89.3%
1ywfA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 43.0 3.39e-01 100.0% 82.6%
2fjcB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 40.0 3.47e-01 86.9% 86.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3227890 611.3.1.4 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Pes-10 0.70 40.0 4.63e-01 84.8% 78.6%
3684944 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.64 36.0 3.75e-01 86.9% 56.8%
4615 109.4.1.225 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GUN4_N 0.63 35.0 3.73e-01 83.8% 62.4%
3353595 109.4.1.1637 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3_assoc_6, UTP6_C 0.62 39.0 2.38e-01 88.9% 10.1%
3742606 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.58 49.0 4.03e-01 97.0% 91.7%
3922866 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.57 47.0 3.98e-01 92.9% 75.0%
3437672 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 45.0 3.52e-01 86.9% 70.2%
165240 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.56 46.0 3.68e-01 92.9% 67.5%
4218735 109.4.1.2787 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, TPR_6, HAT_Syf1_CNRKL1_N 0.56 38.0 2.69e-01 94.9% 23.4%
None — 0.55 38.0 2.72e-01 94.9% 25.1%
3425614 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 36.0 3.69e-01 94.9% 69.5%
4641265 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.53 29.0 2.94e-01 80.8% 48.6%
3207212 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.52 32.0 3.54e-01 85.9% 80.0%
4075573 2485.1.1.41 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_4 0.52 34.0 2.88e-01 71.7% 36.8%