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NC_055862.1__YP_010109751.1__KNV20_gp23__00023
Bact-VirNC_055862.1__YP_010109751.1__KNV20_gp23__00023
Identity
- Accession:
- NC_055862 ↗
- Kingdom:
- phage
Quality
87.7
mean pLDDT
Taxonomy
TaxID: 2759177
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-69_90-167
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05125.19 best | Phage_cap_P2 | 76.5 | 2.80e-21 | 54.9% | 22.3% |
| PF05125.19 | Phage_cap_P2 | 37.6 | 2.00e-09 | 45.8% | 18.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3977525 | 2485.3.1.4 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 | 0.91 | 83.0 | 6.08e-01 | 94.4% | 47.7% |
| 2666180 | 2485.3.1.4 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 | 0.85 | 65.0 | 5.66e-01 | 78.5% | 66.0% |
D2
high
residues 171-282_318-329
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05125.19 best | Phage_cap_P2 | 94.9 | 7.40e-27 | 93.5% | 35.8% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dktA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.74 | 55.0 | 6.18e-01 | 97.6% | 100.0% |
| 2e0zC03 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.74 | 55.0 | 6.21e-01 | 96.8% | 100.0% |
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.73 | 59.0 | 6.34e-01 | 99.2% | 100.0% |
| 7mh2A01 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.72 | 52.0 | 5.92e-01 | 89.5% | 100.0% |
| 1yfsA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 48.0 | 3.91e-01 | 100.0% | 49.4% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3977525 | 2485.3.1.4 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 | 0.89 | 85.0 | 5.98e-01 | 100.0% | 50.8% |
| 4954548 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.71 | 65.0 | 4.97e-01 | 99.2% | 57.8% |
| 4241362 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.70 | 64.0 | 4.79e-01 | 99.2% | 53.9% |
| 3965498 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.68 | 62.0 | 4.54e-01 | 99.2% | 54.6% |
| 5083777 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.66 | 60.0 | 4.50e-01 | 100.0% | 50.3% |
| 4995674 | 2485.3.1.5 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 | 0.64 | 59.0 | 4.61e-01 | 100.0% | 65.5% |
| 5002389 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.64 | 58.0 | 4.47e-01 | 100.0% | 60.0% |
| 4412841 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.61 | 41.0 | 4.03e-01 | 88.7% | 63.7% |
| 4309192 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.58 | 47.0 | 4.34e-01 | 86.3% | 83.2% |
| 3971920 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.57 | 39.0 | 3.42e-01 | 88.7% | 47.0% |
| 4080987 | 298.1.1.13 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › AcetDehyd-dimer | 0.55 | 41.0 | 3.72e-01 | 79.0% | 82.4% |
| 4399129 | 864.1.1.9 ↗ | a+b two layers › DLC › DLC › DLC › DUF7888 | 0.53 | 31.0 | 3.18e-01 | 100.0% | 58.3% |
| 3957384 | 298.1.1.13 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › AcetDehyd-dimer | 0.53 | 39.0 | 3.81e-01 | 76.6% | 100.0% |
| 4079005 | 298.4.1.6 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › T3SS_SCTL | 0.53 | 38.0 | 3.85e-01 | 89.5% | 75.2% |
| 6782 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.52 | 42.0 | 4.11e-01 | 86.3% | 85.2% |
| 4027388 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.51 | 43.0 | 4.11e-01 | 89.5% | 82.1% |
| 4973985 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.51 | 41.0 | 4.06e-01 | 86.3% | 86.9% |