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NC_055862.1__YP_010109763.1__KNV20_gp35__00035

Bact-Vir

NC_055862.1__YP_010109763.1__KNV20_gp35__00035

Identity

Accession:
NC_055862 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Valbvirus› Vibrio_phage_ValB1MD-2

TaxID: 2759177

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-111
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.71 47.0 4.24e-01 77.3% 51.1%
5tprA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.68 60.0 4.21e-01 100.0% 81.9%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.68 46.0 3.47e-01 80.3% 29.5%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 34.0 3.16e-01 93.9% 38.1%
4fppB01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.63 45.0 4.43e-01 77.3% 70.4%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 48.0 3.99e-01 84.8% 48.7%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.61 46.0 4.96e-01 80.3% 91.2%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.60 46.0 4.10e-01 81.8% 58.2%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.59 51.0 3.91e-01 100.0% 90.7%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 47.0 3.89e-01 86.4% 50.4%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.59 42.0 3.28e-01 75.8% 58.6%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.58 41.0 3.06e-01 75.8% 44.1%
1ax8A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 46.0 3.64e-01 90.9% 69.2%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.52 34.0 3.11e-01 80.3% 47.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975487 101.1.4.31 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF5347 0.85 63.0 5.52e-01 84.8% 54.7%
3949869 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.72 54.0 5.30e-01 78.8% 84.3%
3592 632.12.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 0.71 47.0 4.22e-01 77.3% 50.6%
3718088 102.9.1.1 ↗ alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain › CDC45 0.65 47.0 4.02e-01 80.3% 63.5%
346984 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.62 55.0 3.64e-01 100.0% 24.5%
148583 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.62 48.0 3.91e-01 84.8% 45.8%
3299054 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 44.0 2.73e-01 83.3% 34.5%
3627969 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.53 44.0 2.79e-01 92.4% 18.9%