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NC_055866.1__YP_010110035.1__KNV24_gp23__00023
Bact-VirNC_055866.1__YP_010110035.1__KNV24_gp23__00023
Identity
- Accession:
- NC_055866 ↗
- Kingdom:
- phage
Quality
78.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Rountreeviridae›
Copernicusvirus›
Enterococcus_phage_AE4_17
TaxID: 2759198
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 115-169
D2
medium
residues 170-188_310-448
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vc1A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.73 | 37.0 | 4.42e-01 | 84.8% | 70.9% |
| 4l8kD02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.54 | 38.0 | 3.41e-01 | 86.7% | 52.8% |
| 2w3pA02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 38.0 | 3.38e-01 | 85.4% | 50.9% |
| 1i24A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 45.0 | 3.87e-01 | 93.0% | 79.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3281485 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.72 | 37.0 | 4.41e-01 | 84.8% | 72.4% |
| 3974592 | 2496.1.1.5 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS_2 | 0.72 | 37.0 | 4.57e-01 | 84.8% | 78.0% |
| 5032677 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.57 | 53.0 | 4.30e-01 | 100.0% | 86.0% |
| 4649256 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.56 | 52.0 | 4.31e-01 | 100.0% | 63.0% |
| 5074670 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.55 | 52.0 | 4.45e-01 | 100.0% | 73.3% |
| 3953838 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.53 | 40.0 | 3.22e-01 | 85.4% | 41.6% |
| 3958419 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.53 | 40.0 | 3.87e-01 | 85.4% | 69.4% |
| 3257632 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.53 | 37.0 | 3.09e-01 | 85.4% | 40.7% |
| 3663147 | 3070.1.1.14 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › RsfS | 0.52 | 17.0 | 2.54e-01 | 81.0% | 64.3% |
| 3393175 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.51 | 38.0 | 3.25e-01 | 77.2% | 86.4% |
D3
medium
residues 189-309_449-521
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00149.34 best | Metallophos | 33.6 | 7.60e-08 | 87.6% | 36.6% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nxfA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.70 | 64.0 | 5.38e-01 | 95.9% | 99.0% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.68 | 19.0 | 3.62e-01 | 100.0% | 83.3% |
| 7s0tF01 | 3.60.21.50 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › | 0.64 | 58.0 | 4.83e-01 | 94.8% | 82.7% |
| 3t1iD01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.63 | 57.0 | 4.94e-01 | 95.4% | 97.3% |
| 3av0A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.63 | 57.0 | 5.22e-01 | 95.9% | 98.4% |
| 3e0jA01 | 3.60.21.50 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › | 0.62 | 56.0 | 4.76e-01 | 95.4% | 80.3% |
| 3ck2A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.61 | 51.0 | 5.43e-01 | 100.0% | 97.7% |
| 1ii7A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.60 | 55.0 | 5.03e-01 | 95.9% | 99.6% |
| 3clwA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 53.0 | 4.21e-01 | 100.0% | 90.3% |
| 3b5qA00 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.57 | 41.0 | 3.09e-01 | 73.2% | 73.1% |
| 5vanA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 52.0 | 4.01e-01 | 99.5% | 97.4% |
| 2hy1A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.56 | 50.0 | 4.73e-01 | 94.8% | 98.2% |
| 2d1pA00 | 3.40.1260.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like | 0.55 | 37.0 | 4.34e-01 | 77.3% | 100.0% |
| 4h5uA00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.54 | 50.0 | 4.30e-01 | 100.0% | 94.7% |
| 6uqjA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 49.0 | 4.06e-01 | 100.0% | 99.7% |
| 5n6lA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.52 | 45.0 | 4.02e-01 | 90.7% | 95.2% |
| 1vjzA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 48.0 | 4.04e-01 | 100.0% | 99.7% |
| 1lucA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.52 | 47.0 | 4.00e-01 | 99.5% | 100.0% |
| 8ouzD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 37.0 | 3.55e-01 | 74.2% | 77.3% |
| 3axiA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 47.0 | 3.64e-01 | 100.0% | 97.7% |
| 3k8kA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 47.0 | 3.85e-01 | 100.0% | 98.9% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032161 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.78 | 18.0 | 3.44e-01 | 100.0% | 65.6% |
| 3209305 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.73 | 69.0 | 5.29e-01 | 100.0% | 94.3% |
| 3178386 | 246.2.1.15 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PhoD_2 | 0.72 | 67.0 | 4.98e-01 | 100.0% | 94.2% |
| 3788570 | 246.2.1.15 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PhoD_2 | 0.71 | 66.0 | 4.94e-01 | 100.0% | 92.3% |
| 3175032 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.68 | 64.0 | 5.34e-01 | 100.0% | 98.4% |
| 4930638 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.65 | 61.0 | 5.45e-01 | 97.9% | 90.0% |
| 5034849 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.65 | 59.0 | 5.07e-01 | 95.4% | 95.5% |
| 4344720 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.64 | 57.0 | 4.61e-01 | 95.4% | 74.0% |
| 5024200 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.63 | 59.0 | 5.25e-01 | 98.5% | 98.5% |
| 5064385 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.62 | 56.0 | 4.83e-01 | 94.8% | 100.0% |
| 4944650 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.62 | 51.0 | 4.69e-01 | 87.6% | 99.6% |
| 4066993 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.61 | 56.0 | 5.08e-01 | 96.4% | 97.3% |
| 5049204 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.61 | 55.0 | 4.48e-01 | 94.8% | 100.0% |
| 3924352 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.61 | 54.0 | 4.77e-01 | 94.3% | 87.5% |
| 4114717 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.61 | 55.0 | 5.00e-01 | 95.4% | 96.9% |
| 4458988 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.60 | 54.0 | 4.97e-01 | 95.4% | 96.4% |
| 4030540 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.59 | 53.0 | 4.39e-01 | 95.9% | 77.9% |
| 1171308 | 2002.1.1.179 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydr_30_2 | 0.58 | 53.0 | 4.17e-01 | 100.0% | 87.6% |
| 4994533 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.57 | 53.0 | 5.00e-01 | 97.9% | 93.8% |
| 4935486 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.57 | 50.0 | 4.63e-01 | 93.8% | 90.6% |
| 5071975 | 7545.1.1.1 ↗ | a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE | 0.56 | 35.0 | 4.25e-01 | 78.4% | 100.0% |
| 4956038 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.55 | 51.0 | 4.79e-01 | 97.9% | 91.9% |
| 4978967 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.55 | 51.0 | 4.49e-01 | 100.0% | 95.7% |
| 4525117 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.55 | 39.0 | 4.45e-01 | 94.3% | 97.2% |
| 4632171 | 7545.1.1.1 ↗ | a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE | 0.54 | 36.0 | 4.31e-01 | 95.4% | 100.0% |
| 5031301 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.54 | 40.0 | 4.47e-01 | 100.0% | 98.0% |
| 5015986 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.54 | 50.0 | 4.69e-01 | 97.9% | 90.4% |
| None | — | 0.53 | 33.0 | 3.38e-01 | 71.6% | 63.2% | |
| 3838392 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 49.0 | 4.50e-01 | 99.5% | 96.7% |
| 5052847 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.52 | 47.0 | 4.33e-01 | 100.0% | 97.3% |
| 2393041 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.52 | 47.0 | 4.13e-01 | 100.0% | 91.8% |
| 3717015 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.52 | 32.0 | 3.31e-01 | 71.6% | 63.2% |
| 3473480 | 2485.1.1.21 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › TXD17-like_Trx | 0.51 | 31.0 | 3.63e-01 | 96.9% | 86.0% |
| 4979029 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.51 | 43.0 | 4.36e-01 | 87.6% | 100.0% |
| 4158084 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.51 | 37.0 | 3.55e-01 | 74.2% | 77.8% |
| 4982610 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.51 | 47.0 | 4.46e-01 | 99.5% | 100.0% |
| 1503835 | 2498.3.1.1 ↗ | mixed a+b and a/b › Zincin-like › Uncharacterized protein YfcM › Uncharacterized protein YfcM › EpmC | 0.51 | 19.0 | 3.13e-01 | 83.0% | 96.9% |
| 3738304 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 36.0 | 3.17e-01 | 73.2% | 71.5% |