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NC_055907.1__YP_010113646.1__KNV65_gp022__00022

Bact-Vir

NC_055907.1__YP_010113646.1__KNV65_gp022__00022

Identity

Accession:
NC_055907 ↗
Kingdom:
phage

Quality

68.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Denvervirus› Enterococcus_phage_9183

TaxID: 2763102

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-65
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 39.0 3.18e-01 90.0% 28.3%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 38.0 2.76e-01 80.0% 20.1%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 37.0 2.68e-01 80.0% 20.0%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 39.0 3.21e-01 80.0% 31.9%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.64 33.0 2.58e-01 76.0% 22.2%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 38.0 3.11e-01 80.0% 29.5%
4ritA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 50.0 3.31e-01 100.0% 50.2%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 33.0 2.79e-01 92.0% 31.0%
2o0bA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.54 41.0 2.65e-01 82.0% 41.4%
3vkhA08 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 2.54e-01 88.0% 64.4%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.53 39.0 2.52e-01 78.0% 24.2%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.52 39.0 3.43e-01 88.0% 56.3%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 2.44e-01 86.0% 15.6%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.50 36.0 2.71e-01 80.0% 29.8%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 2.67e-01 84.0% 26.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3685473 109.4.1.295 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COP9_hel_rpt 0.68 51.0 2.96e-01 82.0% 8.8%
4937983 101.1.2.139 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.62 41.0 3.28e-01 70.0% 36.2%
3167635 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.61 42.0 3.23e-01 72.0% 48.3%
3223228 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 42.0 2.56e-01 74.0% 17.2%
4649222 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 45.0 3.36e-01 82.0% 33.8%
None — 0.60 50.0 3.09e-01 100.0% 69.9%
3278117 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.60 42.0 2.95e-01 74.0% 47.3%
3603146 2008.1.1.95 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.59 39.0 2.42e-01 100.0% 11.9%
3944068 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.58 40.0 3.06e-01 74.0% 80.8%
3705380 857.1.1.19 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › Ax_dynein_light 0.56 40.0 3.04e-01 76.0% 43.5%
3593033 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 49.0 3.59e-01 100.0% 65.0%
3574531 193.1.1.1 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH 0.53 39.0 2.91e-01 88.0% 27.5%
4243212 109.4.1.1297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.52 38.0 2.15e-01 82.0% 22.7%
3987428 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.52 44.0 3.56e-01 98.0% 99.0%
4932062 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.51 37.0 3.10e-01 82.0% 45.0%
4001526 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.51 41.0 2.51e-01 90.0% 45.5%
3821198 101.1.2.106 ↗ alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.51 38.0 2.74e-01 84.0% 35.5%
3647625 7581.1.1.39 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C, FAE1_CUT1_RppA 0.50 45.0 2.94e-01 100.0% 39.2%