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NC_055907.1__YP_010113662.1__KNV65_gp038__00038
Bact-VirNC_055907.1__YP_010113662.1__KNV65_gp038__00038
Identity
- Accession:
- NC_055907 ↗
- Kingdom:
- phage
Quality
72.2
mean pLDDT
Taxonomy
TaxID: 2763102
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-108
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.65 | 33.0 | 3.61e-01 | 95.3% | 57.5% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.58 | 31.0 | 3.34e-01 | 99.1% | 59.6% |
| 1dfuP00 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.53 | 37.0 | 3.93e-01 | 87.7% | 81.9% |
| 4b3hB01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 43.0 | 3.04e-01 | 87.7% | 40.1% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.53 | 41.0 | 3.29e-01 | 82.1% | 74.9% |
| 3f3zA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 37.0 | 4.09e-01 | 100.0% | 95.1% |
| 3b5mA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 37.0 | 3.61e-01 | 76.4% | 92.4% |
| 4af3A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 37.0 | 4.03e-01 | 100.0% | 92.0% |
| 2oolA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 43.0 | 4.30e-01 | 100.0% | 92.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4068826 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.66 | 34.0 | 3.67e-01 | 100.0% | 57.8% |
| 3981894 | 304.8.1.25 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF5609 | 0.66 | 31.0 | 3.81e-01 | 98.1% | 70.8% |
| 4177358 | 4947.1.1.1 ↗ | a+b complex topology › barrel domain in MalF N-terminal region › barrel domain in MalF N-terminal region › barrel domain in MalF N-terminal region › MalF_P2 | 0.56 | 44.0 | 4.68e-01 | 94.3% | 98.9% |
| 4452919 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.52 | 27.0 | 3.09e-01 | 78.3% | 66.7% |
| 3785896 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.52 | 23.0 | 2.65e-01 | 87.7% | 50.0% |
| 4146757 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 38.0 | 3.22e-01 | 78.3% | 71.1% |
| 4618294 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.52 | 36.0 | 3.76e-01 | 85.8% | 80.0% |
| 3721245 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 38.0 | 3.22e-01 | 79.2% | 75.6% |