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NC_055910.1__YP_010113943.1__KNV68_gp058__00058

Bact-Vir

Identity

Accession:: NC_055910 ↗
Kingdom:: phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Priunavirus› Providencia_phage_PSTCR5

TaxID: 2783547

Cluster

View cluster (2 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-70

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF26822.1 best	Phage_T5_A2	40.2	5.30e-10	100.0%	37.0%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vwbA00	1.10.10.2830	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.68	41.0	3.34e-01	73.3%	31.0%
2cfoA05	1.10.10.350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.64	48.0	4.13e-01	100.0%	49.0%
2xubA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	50.0	4.39e-01	100.0%	59.8%
4m70B00	1.10.246.200	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain	0.62	42.0	3.71e-01	78.3%	47.3%
3q5dA02	1.20.58.420	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP	0.61	53.0	4.59e-01	100.0%	73.2%
3rv0C02	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.61	55.0	4.11e-01	100.0%	78.5%
1bqbA02	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.59	45.0	3.48e-01	98.3%	35.4%
4wriA00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.58	44.0	3.26e-01	88.3%	88.2%
2o7tA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	43.0	3.17e-01	100.0%	29.7%
5lnkJ01	1.20.120.1200	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	0.54	38.0	2.91e-01	78.3%	28.4%
2lrmA00	1.10.890.30	Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein	0.54	39.0	3.57e-01	80.0%	61.9%
3fhnA05	1.10.10.2270	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dsl1p vesicle tethering complex, Tip20p subunit, domain E	0.53	40.0	3.94e-01	100.0%	77.6%
2yksA02	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.53	43.0	3.64e-01	100.0%	85.5%
8adbA01	3.90.70.120	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A ›	0.50	44.0	3.07e-01	100.0%	84.5%
3islA01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.50	39.0	3.18e-01	90.0%	74.2%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3994680	101.1.1.112 ↗	alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg	0.78	72.0	5.88e-01	100.0%	64.8%
3621346	101.1.1.112 ↗	alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg	0.75	67.0	5.61e-01	100.0%	61.0%
3673296	101.1.1.293 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_NDX	0.72	54.0	5.19e-01	100.0%	70.0%
3396511	101.1.1.112 ↗	alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg	0.71	63.0	5.40e-01	100.0%	64.2%
3435662	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.70	62.0	4.88e-01	100.0%	48.8%
3829959	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.69	62.0	5.40e-01	100.0%	66.7%
3564291	101.1.1.66 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5	0.68	61.0	5.40e-01	100.0%	74.1%
3915803	101.1.1.66 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5	0.68	60.0	4.73e-01	100.0%	50.4%
4271716	101.28.1.1 ↗	alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC	0.64	53.0	4.81e-01	100.0%	67.1%
4362265	101.28.1.1 ↗	alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC	0.64	52.0	4.46e-01	100.0%	54.3%
4644045	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.62	51.0	4.41e-01	100.0%	64.8%
4226337	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.61	52.0	4.83e-01	100.0%	75.0%
4618102	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.61	50.0	4.71e-01	100.0%	76.2%
4026520	4085.1.1.5 ↗	alpha arrays › RbcX-like › RbcX-like › RbcX-like › Stevor	0.61	44.0	4.14e-01	78.3%	93.3%
3189083	145.1.1.1 ↗	alpha arrays › F-box domain › F-box domain › F-box domain › F-box	0.61	48.0	4.49e-01	91.7%	70.7%
4060070	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.58	47.0	4.46e-01	100.0%	76.2%
3966774	101.11.1.0 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	0.58	47.0	4.42e-01	100.0%	76.2%
3938097	621.1.1.0 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0.58	47.0	4.00e-01	100.0%	61.7%
3715377	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.57	45.0	4.31e-01	90.0%	91.4%
3709628	601.33.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain	0.56	44.0	4.29e-01	90.0%	91.4%
3477179	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.56	38.0	3.46e-01	70.0%	65.9%
3801023	145.1.1.3 ↗	alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like	0.55	42.0	3.93e-01	86.7%	67.5%
5060034	102.1.1.27 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5	0.50	39.0	3.72e-01	100.0%	74.0%

D2 high residues 97-149

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF26822.1 best	Phage_T5_A2	42.9	7.80e-11	96.2%	39.3%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qltA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.63	53.0	5.13e-01	100.0%	98.4%
2felA00	1.20.200.10	Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain)	0.57	47.0	2.97e-01	100.0%	56.7%
3pfyA02	6.10.20.180	Special › Helix non-globular › Arc Repressor Mutant, subunit A ›	0.52	37.0	3.66e-01	77.4%	98.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4933045	601.7.1.3 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PaREP1	0.61	43.0	3.84e-01	79.2%	98.8%
3287029	5059.1.1.0 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter	0.53	38.0	2.54e-01	83.0%	25.4%
3717093	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.51	34.0	3.22e-01	81.1%	54.3%
4941346	103.4.1.0 ↗	alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	0.51	38.0	3.58e-01	90.6%	84.0%