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NC_055910.1__YP_010113972.1__KNV68_gp087__00087

Bact-Vir

NC_055910.1__YP_010113972.1__KNV68_gp087__00087

Identity

Accession:
NC_055910 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Priunavirus› Providencia_phage_PSTCR5

TaxID: 2783547

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-109
PDB
Domain cluster: rep: KY114934.1__ATI99495.1__X__00138__D15-74
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 5.67e-01 100.0% 79.5%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 56.0 5.80e-01 97.0% 95.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 5.25e-01 100.0% 76.7%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 60.0 5.79e-01 95.5% 92.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.47e-01 95.5% 94.9%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 4.58e-01 94.0% 68.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 5.60e-01 95.5% 84.4%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 4.69e-01 95.5% 58.0%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 5.51e-01 95.5% 90.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.11e-01 91.0% 89.8%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.66 57.0 4.98e-01 100.0% 70.2%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 5.67e-01 100.0% 91.8%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 4.42e-01 100.0% 45.7%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.23e-01 95.5% 45.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 5.21e-01 88.1% 96.9%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.92e-01 89.6% 77.6%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 5.38e-01 94.0% 98.4%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 53.0 4.25e-01 95.5% 75.9%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.32e-01 98.5% 50.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.89e-01 86.6% 91.9%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 5.08e-01 92.5% 100.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 45.0 4.66e-01 85.1% 90.3%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 50.0 4.35e-01 100.0% 67.9%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 46.0 4.30e-01 97.0% 67.8%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 51.0 4.56e-01 97.0% 71.7%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 50.0 4.55e-01 100.0% 95.7%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.92e-01 91.0% 78.3%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.57 43.0 3.97e-01 83.6% 97.8%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.56 49.0 4.82e-01 100.0% 100.0%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 49.0 4.67e-01 100.0% 96.2%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 46.0 4.49e-01 94.0% 84.0%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.55 43.0 4.09e-01 92.5% 69.9%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 46.0 4.09e-01 100.0% 79.8%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.77e-01 89.6% 85.2%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.54 42.0 3.60e-01 91.0% 92.9%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.54 38.0 3.75e-01 76.1% 85.3%
2pm9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.94e-01 95.5% 28.1%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 42.0 3.12e-01 88.1% 73.8%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 44.0 4.04e-01 97.0% 74.5%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 46.0 4.13e-01 100.0% 93.8%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.34e-01 89.6% 56.3%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.53 43.0 3.77e-01 91.0% 85.1%
7bspA01 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.52 42.0 3.44e-01 98.5% 75.7%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 3.84e-01 100.0% 64.9%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.52 43.0 4.11e-01 92.5% 97.5%
1h8eH00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.52 36.0 3.37e-01 74.6% 66.3%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 42.0 3.72e-01 97.0% 68.9%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4220126 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 66.0 6.10e-01 100.0% 81.2%
3766659 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 57.0 5.97e-01 94.0% 95.0%
4555816 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 6.03e-01 100.0% 82.4%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 60.0 4.78e-01 94.0% 45.2%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 58.0 5.94e-01 94.0% 93.8%
4026274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 61.0 4.83e-01 98.5% 46.4%
3806777 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 60.0 5.85e-01 95.5% 93.3%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.49e-01 100.0% 71.1%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.70 59.0 5.59e-01 94.0% 81.2%
3940730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.28e-01 100.0% 66.3%
3924975 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.70 62.0 5.86e-01 100.0% 83.7%
3974490 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.23e-01 86.6% 73.8%
478 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.69 60.0 5.79e-01 95.5% 92.0%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.69 53.0 5.30e-01 89.6% 78.6%
3927213 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.69 57.0 5.68e-01 94.0% 88.6%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.28e-01 100.0% 67.4%
3761319 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.69 57.0 5.83e-01 92.5% 100.0%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.42e-01 88.1% 93.1%
3673944 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 59.0 4.65e-01 100.0% 47.7%
3723175 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 59.0 5.41e-01 100.0% 84.4%
3484606 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 59.0 5.53e-01 100.0% 88.2%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 59.0 4.66e-01 100.0% 51.7%
3823780 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 57.0 5.55e-01 95.5% 88.0%
3167351 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.67 56.0 5.14e-01 92.5% 71.6%
3393358 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 56.0 5.00e-01 100.0% 65.3%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 52.0 5.34e-01 86.6% 96.9%
3342793 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 57.0 4.11e-01 95.5% 37.4%
3932647 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 58.0 5.40e-01 100.0% 78.8%
5077846 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.66 57.0 5.49e-01 95.5% 90.7%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.66 58.0 4.84e-01 100.0% 89.2%
4008273 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.58e-01 100.0% 88.6%
3886139 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 55.0 5.57e-01 100.0% 95.4%
3546727 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 53.0 4.62e-01 91.0% 73.1%
3867207 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.66 56.0 5.01e-01 95.5% 70.5%
3625963 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.66 53.0 4.81e-01 94.0% 64.2%
3257650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.05e-01 92.5% 80.0%
4974641 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.64 54.0 5.35e-01 94.0% 91.4%
4956630 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.64 54.0 4.19e-01 100.0% 41.9%
4300895 4.11.1.6 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › PF31032 0.64 55.0 4.40e-01 100.0% 50.7%
2527304 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.63 51.0 5.30e-01 98.5% 100.0%
3615426 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 55.0 4.29e-01 100.0% 64.0%
3374528 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 52.0 3.39e-01 95.5% 31.5%
3740221 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 54.0 4.18e-01 100.0% 71.2%
3715285 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.62 53.0 4.16e-01 100.0% 44.5%
3492242 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.62 49.0 2.90e-01 89.6% 40.5%
3721062 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.62 53.0 4.93e-01 98.5% 94.1%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.62 50.0 5.01e-01 92.5% 88.6%
3937776 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.61 53.0 5.20e-01 98.5% 98.6%
4108039 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.61 49.0 4.56e-01 97.0% 69.4%
3520308 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.52e-01 95.5% 65.3%
3481048 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.51e-01 94.0% 64.0%
2541236 3820.1.1.0 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain 0.60 47.0 4.24e-01 86.6% 76.0%
4537528 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 5.01e-01 94.0% 98.6%
3773064 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.60 46.0 2.75e-01 88.1% 40.0%
3504760 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.59 47.0 4.34e-01 97.0% 66.7%
3786518 4.8.1.18 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Myosin_N 0.58 47.0 4.79e-01 92.5% 96.9%
3854719 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.55 42.0 2.94e-01 88.1% 80.0%
1851169 1.1.8.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.54 45.0 3.82e-01 97.0% 67.2%
3935315 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.53 46.0 3.82e-01 100.0% 69.6%
3991019 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.52 37.0 3.76e-01 76.1% 84.6%
3801721 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.51 42.0 3.78e-01 92.5% 98.9%