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NC_055910.1__YP_010113988.1__KNV68_gp103__00103

Bact-Vir

NC_055910.1__YP_010113988.1__KNV68_gp103__00103

Identity

Accession:
NC_055910 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Priunavirus› Providencia_phage_PSTCR5

TaxID: 2783547

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-111
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4atoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.56 45.0 3.94e-01 88.7% 82.7%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.56 38.0 4.17e-01 70.8% 100.0%
1x5lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.25e-01 77.4% 68.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4674798 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.74 49.0 4.91e-01 74.5% 65.5%
3601841 327.13.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system 0.72 47.0 3.87e-01 78.3% 38.9%
3988098 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.71 55.0 5.30e-01 82.1% 92.5%
4421311 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.69 52.0 5.17e-01 79.2% 99.1%
4554209 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.67 53.0 5.28e-01 83.0% 99.1%
2392036 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.67 53.0 5.22e-01 83.0% 99.1%
4032331 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.67 52.0 5.12e-01 82.1% 94.8%
4254576 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.67 51.0 5.25e-01 79.2% 100.0%
3970095 3430.1.1.0 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain 0.66 50.0 4.89e-01 79.2% 97.4%
4083034 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.65 50.0 4.99e-01 81.1% 98.2%
3954416 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.63 45.0 4.54e-01 72.6% 95.2%
4211416 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.63 49.0 4.84e-01 81.1% 95.5%
4486406 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.63 48.0 4.83e-01 81.1% 96.4%
3385437 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.61 49.0 5.09e-01 85.8% 99.0%
3838774 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.61 48.0 4.87e-01 83.0% 92.4%
3971757 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 40.0 3.89e-01 77.4% 95.0%
3605269 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 38.0 3.90e-01 71.7% 91.0%
3971461 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 37.0 4.01e-01 71.7% 96.7%
4441129 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.52 37.0 3.57e-01 72.6% 81.7%
4263808 1.1.8.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.50 37.0 3.86e-01 100.0% 85.3%