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NC_055912.1__YP_010114120.1__KNV70_gp31__00031

Bact-Vir

NC_055912.1__YP_010114120.1__KNV70_gp31__00031

Identity

Accession:
NC_055912 ↗
Kingdom:
phage

Quality

72.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jujuvirus› Gordonia_phage_Blino

TaxID: 2793696

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-130
PDB
Domain cluster: rep: MH047631.1__AVR56904.1__PBI_TRISCUIT_31__00031__D4-134
D2 medium residues 143-258
PDB
D3 medium residues 313-426
PDB
D4 medium residues 427-485_572-661
PDB
Domain cluster: rep: BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00276__D51-186
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13472.13 best Lipase_GDSL_2 44.1 4.90e-11 92.6% 83.2%
PF00657.29 Lipase_GDSL 33.2 8.10e-08 91.3% 60.6%
D5 medium residues 486-571
PDB
Domain cluster: rep: NC_013698.1__YP_003359124.1__CMP1-33__00033__D618-700
D6 medium residues 662-718
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jvoA00 1.10.3230.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein 0.72 45.0 3.72e-01 100.0% 37.5%
4rw0A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.72 47.0 3.25e-01 100.0% 20.7%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.65 43.0 4.04e-01 100.0% 54.2%
1nvmA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 32.0 3.12e-01 98.2% 42.2%
3fmyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 46.0 4.43e-01 80.7% 83.3%
7ezyA01 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.60 46.0 3.78e-01 100.0% 43.5%
1fafA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.57 36.0 3.33e-01 100.0% 46.8%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.56 45.0 2.88e-01 89.5% 18.8%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.53 32.0 3.31e-01 96.5% 65.4%
7qv0F01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.52 40.0 3.68e-01 93.0% 63.0%
7uuim02 1.10.1580.10 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › 0.51 30.0 2.77e-01 77.2% 39.5%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.50 41.0 3.06e-01 93.0% 89.7%
1bwoA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.50 34.0 3.01e-01 98.2% 45.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.64 41.0 3.73e-01 100.0% 47.5%
3601089 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.64 38.0 3.38e-01 100.0% 41.2%
3699724 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.62 37.0 3.50e-01 100.0% 47.1%
4001867 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.62 47.0 3.65e-01 84.2% 37.6%
3954117 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.61 41.0 3.70e-01 100.0% 48.2%
5076065 270.1.1.1 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Pur_DNA_glyco 0.60 49.0 3.39e-01 93.0% 29.3%
5057661 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.57 35.0 3.14e-01 96.5% 42.4%
3968363 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.57 35.0 3.52e-01 96.5% 60.0%
3697150 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 3.25e-01 86.0% 34.7%
3794285 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.54 46.0 4.27e-01 100.0% 76.0%
3925923 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.53 44.0 4.24e-01 100.0% 84.3%
3927254 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.52 43.0 4.02e-01 100.0% 96.0%