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NC_055912.1__YP_010114121.1__KNV70_gp32__00032

Bact-Vir

NC_055912.1__YP_010114121.1__KNV70_gp32__00032

Identity

Accession:
NC_055912 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jujuvirus› Gordonia_phage_Blino

TaxID: 2793696

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-155_179-199
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6aiiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 65.0 4.88e-01 100.0% 87.0%
4bpzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 64.0 5.23e-01 100.0% 92.8%
1o4yA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 63.0 5.07e-01 100.0% 86.3%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 63.0 5.07e-01 100.0% 89.3%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 59.0 5.12e-01 100.0% 95.4%
2q1fA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.58 51.0 4.83e-01 100.0% 81.4%
7vt4A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.56 40.0 4.22e-01 95.8% 82.0%
1gnyA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 48.0 4.76e-01 100.0% 88.9%
7zkpA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.55 50.0 4.62e-01 100.0% 94.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5059968 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.84 79.0 6.84e-01 100.0% 84.8%
5060667 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.82 78.0 6.64e-01 100.0% 88.4%
5080223 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.78 74.0 6.39e-01 100.0% 88.1%
2533894 10.1.1.74 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF30275 0.70 65.0 4.88e-01 100.0% 87.0%
3508722 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 43.0 4.61e-01 100.0% 91.7%
5009955 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 34.0 3.84e-01 100.0% 78.2%
5038685 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.55 35.0 3.94e-01 100.0% 84.8%
D2 medium residues 156-178_200-228
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jgtA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 47.0 3.52e-01 98.1% 77.3%
2vgnA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.54 44.0 3.51e-01 100.0% 98.4%
1iowA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 38.0 2.85e-01 80.8% 63.8%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 46.0 2.98e-01 100.0% 23.9%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 40.0 2.77e-01 88.5% 38.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4964957 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 48.0 3.88e-01 100.0% 98.3%
4937734 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.58 47.0 3.84e-01 100.0% 95.7%
5034423 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.53 41.0 2.76e-01 94.2% 77.6%
4972340 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.52 36.0 3.40e-01 100.0% 60.0%
5058372 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.51 40.0 2.91e-01 98.1% 75.9%