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NC_055912.1__YP_010114123.1__KNV70_gp34__00034
Bact-VirNC_055912.1__YP_010114123.1__KNV70_gp34__00034
Identity
- Accession:
- NC_055912 ↗
- Kingdom:
- phage
Quality
70.1
mean pLDDT
Taxonomy
TaxID: 2793696
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-94
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c0eA01 | 1.25.40.790 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.73 | 63.0 | 3.96e-01 | 100.0% | 27.6% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 56.0 | 5.47e-01 | 94.0% | 78.6% |
| 1mabB03 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.70 | 61.0 | 4.65e-01 | 100.0% | 46.6% |
| 1ni3A03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.65 | 54.0 | 4.52e-01 | 96.0% | 56.0% |
| 1za0A00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.65 | 52.0 | 3.39e-01 | 94.0% | 19.8% |
| 2p6vA00 | 1.20.120.1110 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain | 0.64 | 52.0 | 4.41e-01 | 100.0% | 90.7% |
| 2ksfA00 | 1.20.120.620 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Backbone structure of the membrane domain of e. Coli histidine kinase receptor kdpd, | 0.62 | 52.0 | 4.20e-01 | 100.0% | 58.9% |
| 4nrvA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 44.0 | 3.31e-01 | 98.0% | 55.2% |
| 3kwlA02 | 1.10.1060.20 | Mainly Alpha › Orthogonal Bundle › Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 › | 0.54 | 39.0 | 3.16e-01 | 88.0% | 36.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3526919 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.78 | 67.0 | 5.45e-01 | 98.0% | 53.7% |
| 3592342 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.78 | 69.0 | 4.12e-01 | 100.0% | 34.9% |
| 2923620 | 601.55.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › anti-complement domain of BBK32 › anti-complement domain of BBK32 | 0.71 | 57.0 | 4.33e-01 | 94.0% | 36.7% |
| 5078889 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 56.0 | 4.27e-01 | 96.0% | 81.6% |
| 3458018 | 6132.1.1.0 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain | 0.65 | 48.0 | 4.89e-01 | 80.0% | 94.0% |
| 3715999 | 3817.1.1.1 ↗ | alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 | 0.64 | 50.0 | 4.14e-01 | 92.0% | 50.0% |
| 138368 | 601.38.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase receptor KdpD transmembrane domain › Histidine kinase receptor KdpD transmembrane domain › DUF4118 | 0.62 | 52.0 | 4.20e-01 | 100.0% | 58.9% |
| 3180179 | 148.1.1.15 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-X | 0.61 | 50.0 | 4.36e-01 | 90.0% | 90.7% |
| 165604 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.60 | 49.0 | 3.88e-01 | 100.0% | 66.9% |