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NC_055915.1__YP_010114416.1__KNV73_gp004__00004

Bact-Vir

NC_055915.1__YP_010114416.1__KNV73_gp004__00004

Identity

Accession:
NC_055915 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Immutovirus› Flavobacterium_phage_vB_FspM_immuto_2-6A

TaxID: 2801477

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-194
PDB
Domain cluster: rep: SRR1747023_scaffold_5_prodigal-single.1__X__X__00220__D6-190
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08804.17 best gp32 37.1 5.20e-09 92.9% 73.9%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gpcA00 3.90.198.10 Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein 0.81 77.0 6.99e-01 100.0% 85.8%
2z4hA02 2.40.50.540 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain 0.63 32.0 4.43e-01 88.2% 97.7%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 31.0 3.95e-01 86.4% 90.6%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.54 23.0 2.97e-01 72.2% 65.9%
7z0sE01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.51 27.0 3.15e-01 72.8% 70.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3573974 2.1.1.45 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 0.92 87.0 8.34e-01 97.6% 87.4%
378 2.1.1.45 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 0.81 75.0 6.89e-01 96.4% 85.7%
4995733 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 73.0 7.01e-01 100.0% 88.4%
1106142 2.20.1.1 ↗ beta barrels › OB-fold › NlpE C-terminal domain › NlpE C-terminal domain › NlpE_C 0.62 32.0 4.20e-01 88.8% 87.6%
4938456 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.59 23.0 3.24e-01 82.2% 71.1%
4988038 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 35.0 4.07e-01 89.3% 95.0%