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NC_055915.1__YP_010114450.1__KNV73_gp233__00038
Bact-VirNC_055915.1__YP_010114450.1__KNV73_gp233__00038
Identity
- Accession:
- NC_055915 ↗
- Kingdom:
- phage
Quality
87.6
mean pLDDT
Taxonomy
TaxID: 2801477
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 46-76
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kbgA02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.79 | 56.0 | 4.76e-01 | 77.4% | 100.0% |
| 6rjiA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 54.0 | 4.68e-01 | 74.2% | 98.1% |
| 3hjhA02 | 3.30.2060.10 | Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain | 0.73 | 51.0 | 3.86e-01 | 80.6% | 36.0% |
| 1x31D00 | 3.30.2270.10 | Alpha Beta › 2-Layer Sandwich › Folate-binding fold › Folate-binding superfamily | 0.69 | 51.0 | 3.83e-01 | 90.3% | 42.9% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.69 | 49.0 | 3.29e-01 | 96.8% | 76.8% |
| 2wfwB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 45.0 | 3.73e-01 | 77.4% | 89.6% |
| 2dlxA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.64 | 48.0 | 3.47e-01 | 93.5% | 84.1% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.64 | 51.0 | 3.43e-01 | 90.3% | 65.7% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.63 | 51.0 | 4.89e-01 | 100.0% | 82.1% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 42.0 | 3.50e-01 | 77.4% | 50.0% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 44.0 | 3.14e-01 | 90.3% | 44.7% |
| 5xfoA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 40.0 | 3.49e-01 | 87.1% | 87.5% |
| 4amcA01 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.53 | 38.0 | 3.51e-01 | 83.9% | 56.5% |
| 2dnlA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 37.0 | 2.92e-01 | 77.4% | 30.3% |
| 3dcdA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 40.0 | 2.38e-01 | 100.0% | 14.4% |
| 6xi7B02 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.51 | 35.0 | 3.48e-01 | 83.9% | 92.3% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3349740 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.81 | 58.0 | 5.18e-01 | 77.4% | 62.2% |
| 4043931 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.80 | 58.0 | 4.66e-01 | 77.4% | 93.3% |
| 3514981 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 57.0 | 3.88e-01 | 77.4% | 50.9% |
| 4933970 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.79 | 57.0 | 4.62e-01 | 77.4% | 96.7% |
| 3417431 | 5.1.4.297 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 | 0.75 | 59.0 | 3.26e-01 | 90.3% | 14.2% |
| 5070299 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 53.0 | 5.01e-01 | 77.4% | 60.0% |
| 3577380 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.73 | 53.0 | 4.11e-01 | 77.4% | 41.4% |
| 4024311 | 2485.1.1.44 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_7 | 0.72 | 58.0 | 3.79e-01 | 93.5% | 66.9% |
| 4437258 | 4.1.1.178 ↗ | beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 | 0.72 | 53.0 | 3.65e-01 | 77.4% | 20.9% |
| 3930164 | 5.1.4.259 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_CDC20-Fz | 0.72 | 55.0 | 3.07e-01 | 90.3% | 13.7% |
| 4369866 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.71 | 50.0 | 4.75e-01 | 74.2% | 57.5% |
| 5002533 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.71 | 49.0 | 3.50e-01 | 74.2% | 21.9% |
| 4230177 | 2.8.1.2 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 | 0.70 | 50.0 | 3.98e-01 | 77.4% | 47.1% |
| 3520226 | 101.1.1.388 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › FLYWCH | 0.68 | 50.0 | 3.35e-01 | 77.4% | 23.8% |
| 3568037 | 375.1.1.89 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like | 0.68 | 49.0 | 4.62e-01 | 77.4% | 60.0% |
| 3450849 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.68 | 54.0 | 3.68e-01 | 96.8% | 31.7% |
| 3256747 | 2485.1.1.37 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 | 0.67 | 51.0 | 3.46e-01 | 93.5% | 66.9% |
| 4593895 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.66 | 47.0 | 4.76e-01 | 77.4% | 92.0% |
| 4119222 | 375.1.1.135 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev | 0.66 | 50.0 | 4.47e-01 | 90.3% | 66.0% |
| 4947252 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 47.0 | 4.35e-01 | 80.6% | 57.8% |
| 4011287 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 54.0 | 4.28e-01 | 100.0% | 67.1% |
| 4854353 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.66 | 46.0 | 4.07e-01 | 77.4% | 45.3% |
| 3819668 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.65 | 45.0 | 4.14e-01 | 77.4% | 52.3% |
| 4929178 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.64 | 45.0 | 2.76e-01 | 80.6% | 11.2% |
| 3920058 | 708.1.2.10 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › HECT_2 | 0.64 | 51.0 | 3.39e-01 | 100.0% | 25.0% |
| 5068097 | 2484.1.1.71 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RACo_C_ter | 0.64 | 49.0 | 2.79e-01 | 100.0% | 38.6% |
| 3595832 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.64 | 44.0 | 3.80e-01 | 77.4% | 41.8% |
| 3612107 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.62 | 42.0 | 3.60e-01 | 77.4% | 38.3% |
| 4971974 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 43.0 | 2.79e-01 | 77.4% | 15.0% |
| 3973605 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 43.0 | 3.48e-01 | 77.4% | 47.1% |
| 4964214 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.59 | 41.0 | 3.63e-01 | 77.4% | 43.6% |
| 5058430 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.55 | 44.0 | 2.60e-01 | 100.0% | 13.1% |
| 4989457 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 37.0 | 3.43e-01 | 90.3% | 70.0% |