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NC_055915.1__YP_010114489.1__KNV73_gp194__00077
Bact-VirNC_055915.1__YP_010114489.1__KNV73_gp194__00077
Identity
- Accession:
- NC_055915 ↗
- Kingdom:
- phage
Quality
84.1
mean pLDDT
Taxonomy
TaxID: 2801477
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-90
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ixjA01 | 3.30.1300.80 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.70 | 50.0 | 4.84e-01 | 74.3% | 88.3% |
| 2ivxB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.70 | 50.0 | 4.23e-01 | 75.7% | 50.4% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.69 | 51.0 | 4.80e-01 | 80.0% | 72.7% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.67 | 48.0 | 3.70e-01 | 74.3% | 89.3% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.67 | 47.0 | 4.21e-01 | 74.3% | 59.6% |
| 2k3nA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.67 | 50.0 | 3.83e-01 | 80.0% | 70.0% |
| 4dhxB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.66 | 46.0 | 4.24e-01 | 72.9% | 64.8% |
| 5u4nA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 46.0 | 2.93e-01 | 72.9% | 86.6% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.66 | 48.0 | 4.68e-01 | 78.6% | 96.2% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.66 | 46.0 | 3.34e-01 | 72.9% | 29.0% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.65 | 46.0 | 3.55e-01 | 74.3% | 37.4% |
| 4f7nB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.65 | 51.0 | 4.08e-01 | 84.3% | 58.1% |
| 1sg7A00 | 1.10.1740.70 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB | 0.65 | 45.0 | 4.43e-01 | 72.9% | 86.7% |
| 3l9vC00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 54.0 | 4.05e-01 | 97.1% | 40.9% |
| 3e6sA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 43.0 | 3.31e-01 | 71.4% | 71.7% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.62 | 46.0 | 3.55e-01 | 77.1% | 37.0% |
| 2yviA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.61 | 46.0 | 4.30e-01 | 81.4% | 93.3% |
| 2qvwA04 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.61 | 44.0 | 3.53e-01 | 77.1% | 69.0% |
| 2e6oA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.61 | 42.0 | 3.94e-01 | 72.9% | 60.9% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.61 | 42.0 | 3.39e-01 | 72.9% | 42.0% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 43.0 | 3.92e-01 | 75.7% | 68.0% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 43.0 | 4.18e-01 | 80.0% | 77.8% |
| 2qz4A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 39.0 | 3.95e-01 | 74.3% | 71.0% |
| 3dxlA02 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.57 | 48.0 | 3.84e-01 | 98.6% | 59.2% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.57 | 44.0 | 3.91e-01 | 82.9% | 64.4% |
| 1whuA00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.56 | 39.0 | 3.54e-01 | 74.3% | 51.9% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.56 | 34.0 | 3.59e-01 | 72.9% | 67.2% |
| 7tvyA01 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.56 | 46.0 | 4.06e-01 | 98.6% | 94.0% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.56 | 39.0 | 3.83e-01 | 75.7% | 71.8% |
| 7px0A01 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.55 | 38.0 | 3.28e-01 | 74.3% | 89.2% |
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 39.0 | 3.17e-01 | 77.1% | 40.5% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 42.0 | 3.56e-01 | 82.9% | 77.9% |
| 2e1qC10 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.54 | 37.0 | 3.12e-01 | 72.9% | 82.0% |
| 1n5uA05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.54 | 44.0 | 3.84e-01 | 94.3% | 100.0% |
| 4irlB02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.53 | 40.0 | 3.74e-01 | 84.3% | 88.2% |
| 4c0nA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 37.0 | 2.93e-01 | 75.7% | 92.0% |
| 2avuB00 | 1.10.4000.10 | Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD | 0.52 | 37.0 | 3.20e-01 | 74.3% | 82.7% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 40.0 | 3.68e-01 | 87.1% | 85.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082960 | 159.1.2.35 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › HAAS | 0.80 | 56.0 | 5.51e-01 | 72.9% | 93.3% |
| 5084048 | 3831.1.1.15 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › HAAS | 0.73 | 57.0 | 5.38e-01 | 84.3% | 91.8% |
| 5016525 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.73 | 55.0 | 5.30e-01 | 80.0% | 96.2% |
| 5048048 | 4957.1.1.9 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS | 0.72 | 56.0 | 5.49e-01 | 82.9% | 97.3% |
| 5016973 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.71 | 56.0 | 5.20e-01 | 82.9% | 88.2% |
| 4235797 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.69 | 53.0 | 3.85e-01 | 80.0% | 42.9% |
| 4017461 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.65 | 46.0 | 4.06e-01 | 72.9% | 83.0% |
| 4939237 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.65 | 46.0 | 4.74e-01 | 74.3% | 89.2% |
| 3510187 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.62 | 45.0 | 4.39e-01 | 78.6% | 81.2% |
| 1196985 | 3009.1.1.1 ↗ | alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA | 0.62 | 52.0 | 5.41e-01 | 91.4% | 100.0% |
| 3977087 | 2485.1.1.10 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DSBA | 0.62 | 53.0 | 3.99e-01 | 97.1% | 38.4% |
| 5013682 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.61 | 48.0 | 4.45e-01 | 88.6% | 72.2% |
| 3225754 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.59 | 48.0 | 4.36e-01 | 90.0% | 74.7% |
| 4991136 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.59 | 45.0 | 4.78e-01 | 81.4% | 100.0% |
| 5030654 | 5073.1.1.11 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C | 0.57 | 44.0 | 2.63e-01 | 84.3% | 38.2% |
| 5061334 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.57 | 45.0 | 4.35e-01 | 90.0% | 86.3% |
| 4798159 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 37.0 | 3.62e-01 | 70.0% | 61.8% |
| 4213215 | 150.3.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL6 | 0.55 | 44.0 | 3.38e-01 | 90.0% | 91.4% |
| 3705964 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 42.0 | 3.72e-01 | 82.9% | 85.0% |
| 4927172 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.54 | 42.0 | 3.85e-01 | 87.1% | 72.0% |
| 4372125 | 150.3.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL6 | 0.54 | 41.0 | 3.21e-01 | 85.7% | 89.7% |
| 3883670 | 604.1.1.7 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_plectin_7 | 0.53 | 38.0 | 3.21e-01 | 75.7% | 66.7% |
| 3425296 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.53 | 36.0 | 2.91e-01 | 70.0% | 37.8% |
| 4944401 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.53 | 44.0 | 3.41e-01 | 91.4% | 54.2% |
| 3483536 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.53 | 38.0 | 3.19e-01 | 75.7% | 72.5% |
| 4948638 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.51 | 39.0 | 3.69e-01 | 82.9% | 76.2% |
| 3520009 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.51 | 34.0 | 3.32e-01 | 70.0% | 96.2% |
| 4179237 | 6028.1.1.0 ↗ | alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor | 0.50 | 39.0 | 4.02e-01 | 87.1% | 90.8% |