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NC_055915.1__YP_010114507.1__KNV73_gp176__00095

Bact-Vir

NC_055915.1__YP_010114507.1__KNV73_gp176__00095

Identity

Accession:
NC_055915 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Immutovirus› Flavobacterium_phage_vB_FspM_immuto_2-6A

TaxID: 2801477

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-60
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.60e-01 86.7% 68.8%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 44.0 2.69e-01 75.0% 27.4%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.61 44.0 4.33e-01 88.3% 71.2%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.59 46.0 4.31e-01 88.3% 67.5%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 37.0 3.20e-01 78.3% 42.9%
4ushA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 40.0 3.42e-01 75.0% 90.3%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 33.0 2.51e-01 76.7% 23.7%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.71e-01 88.3% 80.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 36.0 3.50e-01 75.0% 81.4%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 37.0 2.51e-01 76.7% 22.0%
3ztvA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 38.0 2.44e-01 83.3% 93.1%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 35.0 2.35e-01 73.3% 40.3%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 3.33e-01 90.0% 90.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4970510 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.68 47.0 4.57e-01 73.3% 66.2%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 48.0 4.55e-01 88.3% 74.7%
141372 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.58 37.0 3.19e-01 80.0% 42.9%
5015352 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 3.90e-01 85.0% 60.2%
3432524 221.1.1.111 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_DUF_assoc 0.57 41.0 3.32e-01 95.0% 40.0%
5081442 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.57 43.0 4.15e-01 85.0% 74.3%
2663669 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.55 42.0 3.20e-01 88.3% 32.5%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.55 43.0 4.17e-01 88.3% 77.9%
4944045 4.17.1.2 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase 0.53 42.0 4.08e-01 90.0% 77.1%
3981155 281.1.1.1 ↗ a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II 0.52 38.0 2.72e-01 81.7% 26.8%
3703231 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.52 36.0 2.65e-01 73.3% 57.6%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.51 40.0 3.82e-01 93.3% 78.7%
5036592 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.51 38.0 3.69e-01 90.0% 81.3%