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NC_055915.1__YP_010114531.1__KNV73_gp152__00119

Bact-Vir

NC_055915.1__YP_010114531.1__KNV73_gp152__00119

Identity

Accession:
NC_055915 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 65.0 6.36e-01 100.0% 80.3%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 65.0 6.37e-01 100.0% 79.4%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 65.0 6.20e-01 95.2% 74.6%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 64.0 6.05e-01 95.2% 73.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 60.0 5.82e-01 100.0% 73.9%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 53.0 5.84e-01 93.5% 93.8%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 5.89e-01 100.0% 84.1%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 59.0 6.05e-01 98.4% 91.5%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 4.78e-01 100.0% 43.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 57.0 5.72e-01 98.4% 88.7%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.67e-01 96.8% 96.2%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.70 62.0 5.49e-01 100.0% 84.4%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 55.0 5.43e-01 87.1% 98.5%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 5.32e-01 93.5% 95.7%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 57.0 5.53e-01 90.3% 91.4%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.69 58.0 5.83e-01 93.5% 93.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.76e-01 91.9% 91.9%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 53.0 5.61e-01 87.1% 98.1%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.68 62.0 5.83e-01 100.0% 91.9%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 55.0 5.61e-01 90.3% 96.6%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.06e-01 90.3% 85.5%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.60e-01 96.8% 98.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.19e-01 87.1% 89.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.34e-01 90.3% 95.3%
4ii1A01 2.30.30.1190 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.18e-01 95.2% 95.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 5.46e-01 100.0% 90.3%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 47.0 4.60e-01 77.4% 76.1%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 5.34e-01 91.9% 95.0%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 45.0 4.42e-01 74.2% 76.1%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 5.36e-01 95.2% 93.9%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 4.57e-01 95.2% 80.0%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 4.60e-01 100.0% 85.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 5.31e-01 100.0% 81.8%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 46.0 4.55e-01 77.4% 83.3%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 56.0 5.38e-01 100.0% 91.4%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 44.0 4.02e-01 79.0% 95.4%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.61 44.0 3.84e-01 80.6% 93.3%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 4.87e-01 87.1% 100.0%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.77e-01 98.4% 96.4%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.56e-01 91.9% 84.5%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 49.0 4.82e-01 93.5% 89.4%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.77e-01 80.6% 83.8%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 52.0 3.74e-01 100.0% 46.8%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.73e-01 90.3% 98.2%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.43e-01 93.5% 80.0%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.69e-01 91.9% 93.4%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 45.0 4.25e-01 88.7% 75.3%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.66e-01 91.9% 93.5%
1xovA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 45.0 4.45e-01 91.9% 93.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 4.34e-01 100.0% 70.3%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 33.0 3.88e-01 87.1% 100.0%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 41.0 3.33e-01 88.7% 48.8%
1u9tA02 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 41.0 3.19e-01 98.4% 58.6%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 3.29e-01 100.0% 75.9%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.51 37.0 3.08e-01 79.0% 80.5%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.50 41.0 3.33e-01 93.5% 98.4%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4888987 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.82 65.0 6.23e-01 93.5% 75.4%
3660964 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.81 66.0 5.52e-01 96.8% 54.0%
3523979 604.12.1.118 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF4537 0.80 58.0 5.95e-01 91.9% 80.0%
3698762 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.80 65.0 5.38e-01 96.8% 52.4%
4605602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 62.0 6.14e-01 93.5% 80.0%
3397846 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 60.0 6.26e-01 100.0% 92.7%
4376886 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.78 69.0 6.34e-01 100.0% 92.5%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 60.0 6.09e-01 90.3% 85.0%
3920026 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.77 59.0 4.06e-01 100.0% 24.8%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 61.0 6.40e-01 95.2% 96.4%
3993250 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.76 58.0 6.15e-01 100.0% 92.7%
3701345 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 68.0 6.22e-01 100.0% 97.5%
3478898 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 59.0 5.89e-01 96.8% 81.5%
3518475 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 58.0 5.61e-01 100.0% 74.3%
4208181 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.75 65.0 6.41e-01 95.2% 95.4%
3564972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 6.02e-01 100.0% 81.4%
3264879 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 59.0 5.65e-01 100.0% 75.7%
5050716 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.74 65.0 5.05e-01 100.0% 52.6%
3247995 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.74 58.0 5.63e-01 98.4% 75.7%
3660358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 60.0 6.11e-01 100.0% 91.7%
1821014 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.73 63.0 6.25e-01 95.2% 96.9%
3989485 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.72 53.0 5.77e-01 93.5% 98.0%
3563220 4.1.1.220 beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.71 62.0 5.74e-01 100.0% 75.0%
3464886 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 60.0 6.08e-01 98.4% 95.0%
4994895 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.70 62.0 5.76e-01 100.0% 88.7%
4964768 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.93e-01 98.4% 95.0%
4038705 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.70 55.0 5.49e-01 87.1% 96.9%
3621642 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 57.0 5.29e-01 90.3% 71.2%
4505316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.97e-01 100.0% 95.0%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.70 57.0 5.67e-01 90.3% 86.2%
4387111 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 62.0 5.69e-01 100.0% 93.8%
598 4.1.1.68 beta barrels › SH3 › SH3 › SH3 › YorP 0.70 60.0 5.74e-01 100.0% 84.5%
1290375 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.70 56.0 5.51e-01 90.3% 98.5%
3573262 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.69 58.0 5.10e-01 91.9% 64.4%
4537356 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 53.0 5.44e-01 83.9% 98.3%
3437523 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.69 58.0 5.61e-01 100.0% 82.9%
3899828 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 56.0 5.21e-01 91.9% 71.2%
3290564 4.1.1.292 beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.68 60.0 5.30e-01 100.0% 85.6%
5031673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.03e-01 100.0% 74.3%
3893368 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.68 58.0 5.78e-01 100.0% 92.3%
3513923 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.29e-01 91.9% 76.0%
3779830 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.68 59.0 5.16e-01 100.0% 65.6%
3572393 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.67 57.0 5.53e-01 100.0% 85.7%
3702915 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 55.0 5.57e-01 90.3% 93.3%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.67 58.0 5.80e-01 96.8% 93.8%
3188712 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.67 60.0 5.11e-01 100.0% 80.0%
3586469 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.67 60.0 5.41e-01 100.0% 72.9%
3924338 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 54.0 5.24e-01 91.9% 80.0%
3712219 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.66 55.0 5.49e-01 98.4% 89.2%
3246255 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 53.0 5.16e-01 90.3% 81.4%
3479350 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 54.0 4.91e-01 91.9% 67.1%
3626531 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 57.0 5.03e-01 96.8% 66.7%
3907870 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 54.0 5.00e-01 91.9% 73.4%
3514453 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 53.0 5.07e-01 91.9% 81.3%
3487936 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 53.0 5.14e-01 90.3% 81.4%
3787441 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 53.0 4.76e-01 91.9% 68.9%
157818 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 53.0 4.74e-01 91.9% 65.9%
3902139 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.65 57.0 5.52e-01 100.0% 88.6%
5058457 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 57.0 5.65e-01 100.0% 93.8%
5024227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.72e-01 100.0% 96.8%
3494765 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.65 53.0 3.63e-01 90.3% 25.9%
4044269 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 57.0 5.48e-01 100.0% 87.1%
3554995 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 53.0 5.12e-01 91.9% 82.9%
3900733 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 53.0 5.11e-01 91.9% 84.3%
3556601 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.65 59.0 5.81e-01 100.0% 95.4%
3413864 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 53.0 3.96e-01 93.5% 35.2%
4134876 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.64 53.0 3.91e-01 91.9% 34.5%
3594081 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.86e-01 91.9% 93.8%
3776390 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.64 52.0 4.34e-01 91.9% 51.3%
3924760 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 58.0 5.09e-01 100.0% 71.1%
1140106 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 57.0 4.60e-01 100.0% 85.6%
3841524 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 52.0 4.35e-01 91.9% 53.6%
3521739 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 52.0 4.69e-01 91.9% 67.1%
3498145 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 52.0 5.16e-01 93.5% 92.2%
3970000 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 56.0 4.80e-01 100.0% 72.0%
1673571 4.1.1.120 beta barrels › SH3 › SH3 › SH3 › SH3_16 0.62 54.0 5.11e-01 100.0% 92.1%
3463482 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.50e-01 96.8% 86.0%
3432877 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 5.10e-01 93.5% 92.3%
3995675 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 49.0 5.03e-01 93.5% 98.3%
3863344 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 3.77e-01 87.1% 76.9%
3767975 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.60 43.0 3.67e-01 79.0% 86.4%
3636812 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 47.0 4.69e-01 91.9% 89.2%
3778581 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 47.0 4.52e-01 93.5% 78.7%
5048050 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 2.78e-01 82.3% 31.2%
4939745 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 46.0 3.27e-01 100.0% 75.9%
3594578 4.18.1.0 beta barrels › SH3 › Plus3 › Plus3 0.55 47.0 3.86e-01 98.4% 61.7%
3741921 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.52 46.0 3.91e-01 100.0% 64.8%
4139173 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 38.0 3.29e-01 80.6% 82.0%