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NC_055915.1__YP_010114546.1__KNV73_gp137__00134

Bact-Vir

NC_055915.1__YP_010114546.1__KNV73_gp137__00134

Identity

Accession:
NC_055915 ↗
Kingdom:
phage

Quality

97.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Immutovirus› Flavobacterium_phage_vB_FspM_immuto_2-6A

TaxID: 2801477

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-97
PDB
Domain cluster: rep: KX925554.1__APC46352.1__X__00090__D2-78
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i87A02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.66 46.0 4.64e-01 92.6% 71.4%
1kdgA02 3.30.410.10 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › Cholesterol Oxidase; domain 2 0.63 47.0 3.69e-01 80.0% 77.9%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.62 45.0 3.05e-01 76.8% 100.0%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 27.0 3.21e-01 73.7% 59.7%
3cxjA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 44.0 3.78e-01 76.8% 87.5%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.38e-01 73.7% 61.4%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.57 40.0 3.80e-01 73.7% 84.7%
1oj5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 39.0 3.81e-01 70.5% 100.0%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.56 43.0 4.39e-01 88.4% 83.0%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 38.0 3.57e-01 72.6% 89.7%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 45.0 4.00e-01 89.5% 87.8%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 4.01e-01 100.0% 84.6%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 39.0 3.78e-01 75.8% 99.1%
3rioA01 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.55 30.0 3.53e-01 85.3% 76.5%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 39.0 2.77e-01 73.7% 95.8%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.54 38.0 3.17e-01 72.6% 83.3%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 39.0 3.73e-01 76.8% 92.0%
2pgcC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.90e-01 91.6% 77.3%
2pgcA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 4.08e-01 98.9% 80.2%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 41.0 4.15e-01 88.4% 92.6%
4ggjA00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.51 35.0 3.02e-01 71.6% 87.3%
6jn7A01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.51 41.0 3.49e-01 92.6% 81.7%
1bnkA00 3.10.300.10 Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) 0.50 41.0 3.33e-01 92.6% 70.5%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.50 38.0 3.54e-01 81.1% 79.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002300 300.1.1.10 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PP_kinase_C_1 0.67 46.0 3.73e-01 70.5% 81.1%
3744021 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.63 56.0 5.38e-01 98.9% 100.0%
3970982 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.63 42.0 4.69e-01 80.0% 92.9%
3228722 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.62 56.0 4.98e-01 100.0% 83.7%
3673690 331.4.1.23 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › Coatomer_b_Cpla 0.61 51.0 4.71e-01 92.6% 80.0%
5075465 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.60 26.0 3.24e-01 90.5% 63.3%
5031724 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.58 47.0 4.89e-01 89.5% 97.8%
4248295 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 43.0 2.97e-01 78.9% 34.2%
3761549 223.1.1.29 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.58 41.0 3.67e-01 73.7% 89.6%
4002352 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.57 47.0 3.73e-01 90.5% 78.5%
3925754 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 26.0 2.34e-01 85.3% 27.4%
3286842 2003.1.2.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_C 0.55 47.0 3.00e-01 96.8% 58.4%
3791593 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.49e-01 77.9% 76.7%
5030536 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.54 38.0 3.75e-01 73.7% 68.0%
4974735 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 38.0 3.47e-01 72.6% 80.8%
3985962 223.1.1.53 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_6 0.54 38.0 3.49e-01 75.8% 71.1%
4023175 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 45.0 2.81e-01 94.7% 60.0%
3660499 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 36.0 2.59e-01 71.6% 27.0%
3387971 325.1.6.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.52 41.0 3.39e-01 85.3% 58.3%
2573963 325.1.6.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.52 42.0 3.53e-01 94.7% 82.3%
4979396 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.52 37.0 3.27e-01 75.8% 89.7%
3238631 2484.1.1.190 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.51 40.0 2.92e-01 84.2% 30.4%
3738978 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.24e-01 73.7% 67.1%
682 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 40.0 4.06e-01 96.8% 85.3%
3773618 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.51 36.0 3.22e-01 73.7% 90.0%
1394279 325.1.6.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.51 44.0 3.78e-01 100.0% 96.9%
3622645 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.50 40.0 4.01e-01 96.8% 85.3%