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NC_055915.1__YP_010114552.1__KNV73_gp131__00140

Bact-Vir

NC_055915.1__YP_010114552.1__KNV73_gp131__00140

Identity

Accession:
NC_055915 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Immutovirus› Flavobacterium_phage_vB_FspM_immuto_2-6A

TaxID: 2801477

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-101
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.64 35.0 3.53e-01 100.0% 52.4%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.62 35.0 3.11e-01 96.8% 38.0%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.62 50.0 5.01e-01 98.4% 98.5%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.59 42.0 4.35e-01 75.8% 89.5%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.58 44.0 3.45e-01 100.0% 35.1%
6v93E01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.58 53.0 3.62e-01 100.0% 81.8%
3p9dE01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.57 48.0 3.24e-01 96.8% 95.1%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 3.45e-01 93.5% 98.7%
3iwcB00 3.30.360.110 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain 0.55 33.0 3.37e-01 100.0% 55.7%
2qnuA00 3.40.1730.10 Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain 0.54 41.0 2.83e-01 100.0% 24.2%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 45.0 3.52e-01 93.5% 43.6%
1hwmA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.53 36.0 3.26e-01 87.1% 50.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.59e-01 96.8% 87.5%
7pzaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 37.0 3.04e-01 75.8% 83.6%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 45.0 3.10e-01 100.0% 26.6%
4qxdA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.52 45.0 3.37e-01 96.8% 49.4%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 45.0 3.91e-01 100.0% 61.9%
1v57A03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 34.0 2.52e-01 72.6% 29.2%
5x9vA01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.52 43.0 2.99e-01 100.0% 98.0%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 41.0 2.87e-01 98.4% 93.1%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.51 43.0 3.83e-01 95.2% 92.1%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.78e-01 95.2% 73.6%
1obsA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.51 33.0 3.07e-01 93.5% 49.4%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.51 40.0 3.89e-01 96.8% 77.5%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 42.0 2.60e-01 95.2% 39.8%
1e94E02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.50 41.0 3.64e-01 98.4% 97.0%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.50 40.0 2.82e-01 87.1% 89.3%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3671921 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.64 28.0 3.05e-01 79.0% 41.8%
3376457 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.61 34.0 2.84e-01 93.5% 34.0%
3652692 2485.1.1.86 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Alba 0.60 37.0 2.71e-01 100.0% 20.5%
3986225 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.59 42.0 2.97e-01 75.8% 33.2%
3358578 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 33.0 2.99e-01 98.4% 38.8%
3244833 3914.1.1.2 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.58 49.0 2.81e-01 100.0% 15.2%
3614367 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.58 44.0 3.25e-01 90.3% 95.1%
3277822 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.57 50.0 3.77e-01 100.0% 41.4%
3273707 3240.1.1.2 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA 0.57 46.0 3.74e-01 90.3% 68.0%
4965179 5040.1.1.0 ↗ extended segments › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region 0.57 48.0 4.58e-01 98.4% 93.3%
3595739 1056.1.1.0 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain 0.57 50.0 3.38e-01 100.0% 39.6%
3601652 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.56 51.0 4.11e-01 100.0% 57.4%
4441223 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.55 46.0 3.51e-01 95.2% 38.7%
5083960 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.55 48.0 3.42e-01 100.0% 45.8%
3941255 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.55 47.0 3.07e-01 100.0% 21.7%
5000735 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.10e-01 85.5% 57.7%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.54 47.0 3.80e-01 100.0% 73.4%
4400946 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.53 45.0 3.44e-01 100.0% 40.0%
3611776 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 47.0 3.60e-01 100.0% 43.6%
3268142 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.53 44.0 2.87e-01 98.4% 35.3%
5083115 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.53 44.0 3.24e-01 96.8% 51.9%
4028109 3525.1.1.0 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.52 40.0 4.01e-01 100.0% 81.5%
3287147 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.51 45.0 3.25e-01 100.0% 35.3%
3335040 5.1.3.129 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BRX 0.51 32.0 3.40e-01 93.5% 70.9%
4441043 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 43.0 3.24e-01 96.8% 36.9%
4250601 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.51 43.0 3.16e-01 96.8% 34.7%
3284762 4090.1.1.0 ↗ a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.50 44.0 3.38e-01 100.0% 83.4%
5058002 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.50 40.0 3.08e-01 85.5% 80.6%
3967987 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.50 39.0 3.35e-01 90.3% 70.9%
5076904 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 44.0 3.33e-01 96.8% 88.3%