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NC_055915.1__YP_010114555.1__KNV73_gp128__00143

Bact-Vir

NC_055915.1__YP_010114555.1__KNV73_gp128__00143

Identity

Accession:
NC_055915 ↗
Kingdom:
phage

Quality

92.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-85
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.67 59.0 5.61e-01 100.0% 88.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.67 34.0 4.09e-01 88.0% 74.1%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 37.0 4.61e-01 94.0% 92.3%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.63 56.0 4.53e-01 100.0% 81.3%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.61 48.0 3.93e-01 85.5% 71.4%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 53.0 3.48e-01 96.4% 84.7%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 54.0 3.73e-01 100.0% 93.9%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 52.0 3.53e-01 96.4% 83.0%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 53.0 3.65e-01 100.0% 93.8%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.41e-01 96.4% 76.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 37.0 4.42e-01 95.2% 93.0%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.41e-01 96.4% 88.0%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 37.0 4.24e-01 94.0% 88.3%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 51.0 3.52e-01 98.8% 75.3%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 51.0 3.44e-01 98.8% 68.4%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 50.0 3.54e-01 98.8% 80.6%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 51.0 3.55e-01 100.0% 91.9%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 51.0 3.41e-01 98.8% 80.4%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.43e-01 97.6% 37.6%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 4.06e-01 96.4% 72.7%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 49.0 3.36e-01 97.6% 88.3%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 4.32e-01 100.0% 75.2%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 41.0 2.99e-01 78.3% 40.2%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 32.0 3.50e-01 81.9% 67.2%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 49.0 3.37e-01 98.8% 86.0%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 4.24e-01 100.0% 71.7%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 38.0 2.73e-01 71.1% 52.8%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.56 33.0 4.00e-01 95.2% 96.1%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 3.16e-01 94.0% 90.5%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.25e-01 97.6% 91.3%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 4.16e-01 100.0% 77.6%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 45.0 3.08e-01 94.0% 82.1%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 34.0 3.90e-01 100.0% 88.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 31.0 3.90e-01 92.8% 97.9%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.71e-01 94.0% 62.5%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.52 42.0 3.54e-01 91.6% 62.7%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 43.0 3.00e-01 97.6% 68.1%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.52 43.0 2.96e-01 97.6% 80.7%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 38.0 2.78e-01 79.5% 39.2%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.52 43.0 3.05e-01 96.4% 81.0%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 38.0 2.82e-01 80.7% 40.4%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.80e-01 94.0% 76.2%
6ncyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.67e-01 77.1% 94.4%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 43.0 3.55e-01 97.6% 65.5%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.50 39.0 3.74e-01 81.9% 81.1%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.83e-01 95.2% 80.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4250402 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 34.0 4.38e-01 84.3% 91.1%
3976834 4.1.1.156 beta barrels › SH3 › SH3 › SH3 › DUF2158 0.66 38.0 4.77e-01 97.6% 96.0%
3302818 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.65 39.0 4.60e-01 100.0% 89.1%
4079197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 43.0 4.32e-01 100.0% 65.9%
4177200 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.65 38.0 4.58e-01 94.0% 89.1%
4559371 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 43.0 4.84e-01 100.0% 90.5%
4101502 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.64 38.0 4.60e-01 92.8% 92.6%
3967510 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.64 46.0 4.96e-01 96.4% 88.6%
3485965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 38.0 4.39e-01 98.8% 86.7%
4039417 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.61 53.0 3.69e-01 100.0% 93.3%
3699727 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 46.0 3.00e-01 80.7% 89.2%
3192998 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.61 54.0 3.67e-01 100.0% 93.5%
3518523 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 53.0 3.63e-01 96.4% 84.9%
1688207 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.60 53.0 3.64e-01 100.0% 93.8%
4016261 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.60 52.0 3.52e-01 97.6% 72.7%
959119 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.60 36.0 4.41e-01 94.0% 94.4%
3456496 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.60 40.0 3.57e-01 100.0% 49.6%
3648910 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.60 39.0 3.85e-01 96.4% 62.2%
4961310 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.59 52.0 3.64e-01 100.0% 93.4%
3708379 5.1.5.208 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.59 47.0 2.79e-01 89.2% 25.6%
3870514 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 46.0 4.17e-01 94.0% 61.7%
5002442 5.1.3.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TrAA12 0.59 51.0 3.35e-01 95.2% 83.4%
3941391 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 40.0 4.59e-01 98.8% 96.7%
3783703 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.59 52.0 3.48e-01 100.0% 93.7%
4141828 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 43.0 4.49e-01 98.8% 86.5%
3935101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 40.0 4.39e-01 100.0% 90.8%
3684646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 38.0 3.89e-01 100.0% 68.8%
3248011 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.58 48.0 3.31e-01 96.4% 57.6%
3520914 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 50.0 2.83e-01 97.6% 11.2%
3460252 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.57 49.0 3.07e-01 96.4% 49.3%
3190113 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 45.0 3.16e-01 89.2% 48.9%
3580950 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 49.0 3.45e-01 97.6% 81.1%
3645923 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 3.13e-01 94.0% 46.3%
3927795 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 37.0 4.16e-01 98.8% 95.0%
3233582 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 42.0 2.92e-01 100.0% 22.2%
3519451 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 47.0 4.01e-01 97.6% 71.7%
3229011 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 47.0 4.03e-01 100.0% 94.5%
5056748 5.1.3.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 0.55 45.0 3.01e-01 92.8% 41.6%
3706274 7026.1.1.0 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.55 44.0 3.43e-01 88.0% 68.9%
3633647 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.55 35.0 3.77e-01 85.5% 80.0%
3973387 5.1.5.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF3686 0.55 41.0 2.85e-01 81.9% 51.6%
3926124 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 48.0 4.14e-01 100.0% 71.9%
3930366 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 36.0 4.05e-01 98.8% 95.0%
3939243 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 48.0 4.13e-01 100.0% 71.9%
4031110 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 4.07e-01 95.2% 67.2%
3700132 7026.1.1.0 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.54 43.0 2.95e-01 88.0% 58.1%
3926179 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 39.0 4.31e-01 100.0% 96.9%
3245739 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 47.0 3.76e-01 100.0% 60.6%
5001589 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.53 38.0 3.62e-01 97.6% 62.0%
4958733 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.96e-01 77.1% 80.0%
3994977 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 45.0 3.11e-01 98.8% 77.6%
3281945 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 40.0 3.94e-01 100.0% 75.6%
3929563 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.52 44.0 2.89e-01 94.0% 78.9%
1503651 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 35.0 3.59e-01 95.2% 71.2%
154364 10.1.1.21 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.51 43.0 3.57e-01 97.6% 67.5%
4311881 3321.1.1.1 a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander 0.51 44.0 3.61e-01 97.6% 70.0%
4946972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.90e-01 83.1% 86.7%
3174934 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.50 43.0 2.98e-01 97.6% 69.5%
3279144 10.37.1.1 beta sandwiches › jelly-roll › TerD › TerD › TerD 0.50 39.0 3.19e-01 86.7% 81.2%
4937705 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.50 39.0 3.79e-01 81.9% 83.3%