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NC_055915.1__YP_010114560.1__KNV73_gp123__00148

Bact-Vir

NC_055915.1__YP_010114560.1__KNV73_gp123__00148

Identity

Accession:
NC_055915 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-99
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 25.0 2.90e-01 75.0% 59.1%
7rb4A01 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.52 47.0 3.67e-01 100.0% 88.2%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 31.0 3.44e-01 86.5% 76.7%
4ri1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 36.0 3.04e-01 76.0% 81.1%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.50 43.0 3.77e-01 99.0% 81.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075144 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.70 42.0 4.70e-01 83.3% 77.3%
4345964 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.55 32.0 3.30e-01 86.5% 57.9%
4941329 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.52 34.0 3.41e-01 89.6% 64.0%
3718004 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.52 42.0 3.10e-01 88.5% 82.2%
4629783 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.52 34.0 3.16e-01 88.5% 53.3%
4025013 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.51 41.0 3.05e-01 88.5% 87.3%
4995231 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.51 33.0 3.36e-01 92.7% 66.7%
4674581 3281.1.1.4 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,NADH5_C 0.50 42.0 2.60e-01 95.8% 41.6%
D2 high residues 104-209
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 53.2 4.90e-14 90.6% 90.8%
PF13455.13 MUG113 33.4 7.30e-08 75.5% 98.6%