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NC_055915.1__YP_010114580.1__KNV73_gp103__00168

Bact-Vir

NC_055915.1__YP_010114580.1__KNV73_gp103__00168

Identity

Accession:
NC_055915 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Immutovirus› Flavobacterium_phage_vB_FspM_immuto_2-6A

TaxID: 2801477

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-61
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 47.0 3.34e-01 73.2% 66.3%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 45.0 3.47e-01 73.2% 31.8%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 46.0 3.23e-01 76.8% 34.4%
4iykA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 45.0 3.62e-01 76.8% 77.1%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 42.0 2.64e-01 73.2% 12.9%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 43.0 3.45e-01 82.1% 36.2%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 45.0 2.94e-01 78.6% 18.5%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 43.0 2.61e-01 75.0% 11.3%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 41.0 2.63e-01 75.0% 13.2%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 42.0 3.21e-01 73.2% 61.8%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 42.0 3.98e-01 83.9% 59.2%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.62e-01 76.8% 83.0%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 3.70e-01 73.2% 55.1%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.58 42.0 4.00e-01 91.1% 64.8%
3bvxA05 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 40.0 3.41e-01 75.0% 94.8%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 41.0 3.35e-01 76.8% 64.2%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 41.0 2.55e-01 83.9% 19.8%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.56 35.0 2.65e-01 71.4% 24.7%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 38.0 4.08e-01 78.6% 85.4%
4fqpA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.29e-01 76.8% 63.0%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 37.0 3.58e-01 85.7% 63.2%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.33e-01 82.1% 72.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.53 36.0 2.98e-01 71.4% 45.2%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 37.0 3.65e-01 75.0% 68.3%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.53 34.0 2.86e-01 71.4% 33.9%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.60e-01 100.0% 33.5%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 39.0 3.14e-01 83.9% 62.3%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 2.95e-01 75.0% 67.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004087 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 48.0 4.31e-01 76.8% 53.8%
4946576 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.65 46.0 3.26e-01 75.0% 24.7%
4942259 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.65 44.0 3.41e-01 73.2% 31.1%
3198214 274.1.1.48 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7924 0.64 46.0 4.33e-01 76.8% 61.4%
5041730 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.64 45.0 3.37e-01 75.0% 29.0%
4995812 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.64 45.0 3.70e-01 75.0% 41.0%
4991994 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 45.0 4.56e-01 82.1% 78.2%
4451691 7512.1.1.24 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.62 43.0 2.75e-01 73.2% 15.1%
3911618 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.62 45.0 3.18e-01 82.1% 25.1%
4990492 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 43.0 4.55e-01 76.8% 84.0%
3832419 319.1.1.13 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26144 0.60 42.0 3.47e-01 73.2% 43.0%
3838288 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 45.0 3.63e-01 83.9% 60.9%
3938274 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.59 52.0 3.53e-01 100.0% 47.3%
4955517 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.59 43.0 3.47e-01 78.6% 63.6%
3479868 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 40.0 3.54e-01 75.0% 46.7%
4990980 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 40.0 3.37e-01 73.2% 42.1%
3522960 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 45.0 3.41e-01 87.5% 53.8%
3863194 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 44.0 3.35e-01 82.1% 58.5%
3480052 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 36.0 4.19e-01 76.8% 100.0%
3871082 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 39.0 2.93e-01 73.2% 32.0%
4640527 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.57 39.0 3.11e-01 78.6% 32.8%
4015004 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 50.0 2.89e-01 100.0% 79.9%
3676628 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.57 39.0 3.15e-01 73.2% 68.3%
4600598 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 43.0 3.48e-01 83.9% 56.5%
5014292 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 40.0 4.14e-01 75.0% 84.0%
3167247 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 2.94e-01 98.2% 22.9%
3716770 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.56 38.0 3.19e-01 73.2% 70.5%
3513352 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.56 39.0 3.11e-01 80.4% 35.7%
3736443 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.55 48.0 3.03e-01 100.0% 31.4%
3240661 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 2.83e-01 82.1% 70.5%
3581254 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 39.0 4.02e-01 80.4% 78.2%
3675930 883.1.1.9 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_LBD 0.55 41.0 2.93e-01 82.1% 36.1%
5031219 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.55 40.0 3.25e-01 82.1% 60.0%
3460252 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.55 42.0 2.48e-01 85.7% 66.4%
3593482 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.54 38.0 3.22e-01 75.0% 59.0%
3183463 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.54 37.0 3.05e-01 73.2% 36.4%
3387925 243.4.1.0 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.53 36.0 3.49e-01 75.0% 61.5%
3250605 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 37.0 2.96e-01 75.0% 35.2%
3670595 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 35.0 3.08e-01 75.0% 41.1%
3660311 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 37.0 3.41e-01 76.8% 55.0%
1829536 6173.1.1.0 ↗ beta barrels › V1/V2 domain in HIV gp120 › V1/V2 domain in HIV gp120 › V1/V2 domain in HIV gp120 0.53 36.0 3.72e-01 75.0% 98.0%
3265334 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 36.0 2.93e-01 71.4% 37.3%
4960002 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.34e-01 80.4% 61.1%
4416182 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.52 36.0 3.05e-01 80.4% 40.0%
3718964 7039.1.1.0 ↗ a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM 0.52 44.0 2.89e-01 96.4% 55.5%
3809890 331.3.1.28 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.51 36.0 2.52e-01 76.8% 22.3%
3608636 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.53e-01 100.0% 8.8%
4959998 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 37.0 3.10e-01 80.4% 52.4%
5065571 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.51 40.0 2.62e-01 91.1% 86.4%
5045702 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 43.0 2.83e-01 96.4% 51.6%
4926797 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.50 37.0 2.89e-01 82.1% 34.6%
4943345 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 33.0 2.89e-01 78.6% 39.0%
3608102 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 36.0 3.44e-01 76.8% 62.9%
4116159 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.50 35.0 3.14e-01 82.1% 48.9%
D2 medium residues 78-104
PDB
Domain cluster: representative
D3 medium residues 110-242
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00004__D1343-1480