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NC_055915.1__YP_010114605.1__KNV73_gp078__00193

Bact-Vir

Identity

Accession:: NC_055915 ↗
Kingdom:: phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Immutovirus› Flavobacterium_phage_vB_FspM_immuto_2-6A

TaxID: 2801477

Cluster

View cluster (6 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 85-198

PDB

Domain cluster: representative

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3idwA00	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.71	39.0	4.94e-01	85.1%	92.4%
1c3cA03	1.10.40.30	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain)	0.70	35.0	4.11e-01	86.0%	67.9%
1dcnA03	1.10.40.30	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain)	0.70	37.0	4.55e-01	84.2%	81.9%
1z2iA01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.67	35.0	3.93e-01	98.2%	64.5%
4h8aB01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.66	34.0	4.50e-01	99.1%	95.0%
3i0pA01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.65	37.0	3.79e-01	90.4%	58.3%
1nxuA01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.65	35.0	4.15e-01	98.2%	75.9%
3fblA00	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.64	41.0	4.72e-01	82.5%	89.0%
1vbiA01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.64	35.0	3.67e-01	90.4%	59.2%
1rfmA01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.63	36.0	3.43e-01	97.4%	47.7%
1xrhD01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.63	35.0	3.67e-01	98.2%	59.2%
3nz4B03	1.10.274.20	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3	0.58	41.0	4.32e-01	85.1%	81.7%
3h4cA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.57	37.0	4.02e-01	86.0%	77.1%
1zp2A02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.56	37.0	3.80e-01	86.0%	69.6%
4nqwA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.55	32.0	3.73e-01	80.7%	78.6%
1aisB01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.55	40.0	4.31e-01	76.3%	100.0%
1c9bA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.55	40.0	4.32e-01	76.3%	100.0%
5ts9B00	1.20.59.10	Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase	0.55	37.0	3.39e-01	70.2%	77.6%
4rocA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.53	40.0	4.24e-01	79.8%	98.1%
4yosA02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.53	38.0	3.42e-01	75.4%	73.8%
3r1vA00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.51	36.0	3.53e-01	73.7%	91.9%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4933341	4953.1.1.2 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C	0.69	36.0	4.49e-01	85.1%	81.4%
4943010	103.2.1.2 ↗	alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone	0.60	39.0	4.41e-01	86.8%	88.2%
3407816	3832.1.1.1 ↗	alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758	0.52	42.0	3.77e-01	86.8%	76.1%
3363158	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.52	37.0	4.11e-01	83.3%	91.1%
3449999	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.52	43.0	4.15e-01	97.4%	77.7%

D2 medium residues 3-38

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4j3fA00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.65	47.0	2.86e-01	80.6%	19.7%
1dinA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.63	52.0	3.21e-01	97.2%	46.4%
2f4qA02	1.10.132.120	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.62	52.0	3.65e-01	100.0%	28.3%
1wcrA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.58	47.0	3.41e-01	91.7%	35.9%
1wjzA00	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.54	48.0	3.53e-01	100.0%	41.5%
4h33A00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	42.0	3.25e-01	100.0%	41.8%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3895434	101.1.1.76 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2	0.66	50.0	3.42e-01	83.3%	28.3%
2936644	4120.1.1.0 ↗	few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP	0.63	52.0	4.56e-01	100.0%	62.1%
4964480	213.1.1.1 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1	0.62	47.0	3.04e-01	100.0%	17.6%
5065823	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.61	49.0	3.06e-01	91.7%	17.1%
3503070	2007.2.3.12 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Tc-R-P	0.59	48.0	3.26e-01	94.4%	27.3%
1086277	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.54	45.0	2.98e-01	94.4%	27.3%

D3 medium residues 51-80

PDB

Domain cluster: representative

D4 medium residues 199-353

PDB

Domain cluster: rep: IMGVR_UViG_3300037842_000514-3300037842-Ga0427874_000162_24822_26075__D202-239_316-417

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7v5yA01	3.40.1620.10	Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain	0.61	20.0	3.30e-01	78.1%	82.4%
4ijaA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	23.0	3.45e-01	74.8%	96.8%
6az1a00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	23.0	3.26e-01	75.5%	87.5%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3370400	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.60	25.0	3.59e-01	98.1%	82.9%
4993353	101.1.2.30 ↗	alpha arrays › HTH › HTH › winged helix domain › TrmB	0.58	25.0	3.06e-01	97.4%	61.0%
4958659	101.1.2.141 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_24	0.57	25.0	3.23e-01	98.7%	68.9%
4980926	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	24.0	2.94e-01	98.1%	58.1%
4993352	101.1.2.135 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR_2	0.56	24.0	3.34e-01	97.4%	77.5%
4927558	101.1.2.44 ↗	alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25	0.55	24.0	3.18e-01	74.2%	75.0%
3481546	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	24.0	3.58e-01	98.7%	96.9%
4980131	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	24.0	2.84e-01	97.4%	57.3%
4959976	101.1.2.141 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_24	0.54	23.0	2.75e-01	97.4%	54.5%
5032271	101.1.2.44 ↗	alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25	0.53	24.0	3.19e-01	75.5%	78.8%
4444948	101.1.2.44 ↗	alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25	0.52	23.0	3.14e-01	74.8%	77.5%
5031411	101.1.2.136 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_20	0.52	23.0	3.11e-01	75.5%	77.5%
4944958	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	23.0	3.25e-01	76.8%	90.0%
5068565	101.1.2.14 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_5	0.51	23.0	2.96e-01	74.8%	70.0%
4992707	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	36.0	3.78e-01	72.3%	97.1%
5074663	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	25.0	3.23e-01	76.8%	82.4%