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NC_055915.1__YP_010114636.1__KNV73_gp047__00224

Bact-Vir

NC_055915.1__YP_010114636.1__KNV73_gp047__00224

Identity

Accession:
NC_055915 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Immutovirus› Flavobacterium_phage_vB_FspM_immuto_2-6A

TaxID: 2801477

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-94
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.64 47.0 3.39e-01 78.3% 37.5%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.31e-01 96.4% 62.9%
4lg8A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 3.36e-01 97.6% 72.9%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 47.0 3.27e-01 95.2% 69.2%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.56 46.0 2.74e-01 90.4% 54.1%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 47.0 3.37e-01 100.0% 66.3%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 3.20e-01 95.2% 68.5%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.54 47.0 3.91e-01 100.0% 55.5%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 3.22e-01 98.8% 75.9%
1v0fA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 42.0 2.92e-01 92.8% 60.4%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.19e-01 100.0% 58.1%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.09e-01 100.0% 52.3%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.12e-01 97.6% 68.2%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 44.0 2.92e-01 97.6% 65.7%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.94e-01 96.4% 40.1%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4441857 3347.1.1.6 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › RHS_repeat, DUF6531, TEN_YD-shell 0.63 48.0 3.09e-01 83.1% 17.2%
3944564 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.63 49.0 2.82e-01 84.3% 9.2%
4119187 3735.1.1.12 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.62 48.0 2.70e-01 83.1% 8.2%
3965131 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.61 51.0 5.05e-01 94.0% 100.0%
4433757 3347.1.1.3 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › RHS_repeat, DUF6531 0.60 47.0 2.96e-01 84.3% 15.8%
4074775 5.1.5.143 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › TPR_Sec16 0.60 50.0 2.97e-01 96.4% 38.3%
3984133 3735.1.1.12 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.59 46.0 2.61e-01 84.3% 7.2%
3979006 77.1.1.15 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › RHS_repeat, DUF6531, TEN_YD-shell 0.59 50.0 3.17e-01 96.4% 27.7%
4022800 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 49.0 3.13e-01 96.4% 55.0%
3743793 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.58 48.0 3.13e-01 96.4% 82.3%
4216435 3735.1.1.12 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.57 49.0 3.07e-01 96.4% 39.6%
3563385 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 46.0 3.03e-01 89.2% 61.8%
3716034 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 47.0 3.22e-01 94.0% 58.5%
3520790 3735.1.1.0 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein 0.57 48.0 3.27e-01 96.4% 46.0%
1756816 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.57 48.0 3.36e-01 97.6% 72.5%
4978399 210.1.2.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT 0.56 45.0 3.23e-01 89.2% 48.7%
4941102 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.55 46.0 3.25e-01 96.4% 85.0%
3710514 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 3.42e-01 98.8% 88.5%
4199197 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.54 44.0 3.37e-01 91.6% 67.5%
2631766 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.54 46.0 4.10e-01 100.0% 88.9%
3621467 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.53 43.0 3.27e-01 90.4% 48.8%
3777739 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 3.02e-01 100.0% 65.6%
3994733 5.1.3.209 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_BBS7 0.52 44.0 3.06e-01 100.0% 43.3%
3520119 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.52 42.0 2.82e-01 94.0% 60.8%
3576534 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.51 41.0 3.26e-01 90.4% 67.2%
3519934 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.51 42.0 3.24e-01 100.0% 98.3%
3621626 5.1.4.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.51 42.0 2.88e-01 97.6% 43.7%
3916215 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 42.0 2.87e-01 100.0% 41.6%
D2 high residues 450-577
PDB
Domain cluster: rep: KJ803031.1__AID16847.1__vBDshPR2C_32__00032__D58-159