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NC_055919.1__YP_010114826.1__KNV77_gp008__00008

Bact-Vir

NC_055919.1__YP_010114826.1__KNV77_gp008__00008

Identity

Accession:
NC_055919 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Efbeekayvirus› Klebsiella_phage_vB_KpnP_P184

TaxID: 2806547

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-67
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 49.0 3.20e-01 80.6% 48.5%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 5.37e-01 100.0% 95.2%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 45.0 2.82e-01 79.0% 35.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 5.24e-01 96.8% 100.0%
7pk0A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 44.0 3.53e-01 79.0% 53.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.61 42.0 4.18e-01 74.2% 78.8%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.60 42.0 3.62e-01 74.2% 93.2%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 47.0 2.97e-01 87.1% 35.2%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.60 40.0 3.63e-01 71.0% 100.0%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 2.99e-01 72.6% 27.9%
2hh8A00 3.30.1810.10 Alpha Beta › 2-Layer Sandwich › YdfO-like fold › YdfO-like 0.59 45.0 3.65e-01 85.5% 85.0%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 46.0 2.95e-01 85.5% 23.5%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 40.0 3.28e-01 71.0% 94.0%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.57 43.0 4.03e-01 80.6% 92.1%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 38.0 2.87e-01 71.0% 48.8%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.36e-01 82.3% 57.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.23e-01 98.4% 84.4%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.28e-01 95.2% 94.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 4.04e-01 79.0% 92.6%
1sqhA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 41.0 3.27e-01 79.0% 51.9%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 39.0 4.16e-01 95.2% 97.9%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 46.0 3.42e-01 100.0% 85.4%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.18e-01 93.5% 100.0%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.55 45.0 3.94e-01 93.5% 100.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 44.0 4.04e-01 100.0% 67.1%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.55 44.0 3.96e-01 90.3% 87.6%
3jb9L00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.97e-01 96.8% 86.7%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 3.93e-01 88.7% 82.1%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.53 45.0 2.75e-01 96.8% 31.9%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.53 44.0 3.78e-01 100.0% 78.6%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.60e-01 98.4% 92.5%
5xyig01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.88e-01 96.8% 87.7%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 44.0 3.33e-01 100.0% 84.1%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 3.82e-01 77.4% 98.3%
2ymuA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.89e-01 96.8% 74.0%
3eytB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 36.0 2.86e-01 75.8% 87.7%
4hqsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 34.0 2.84e-01 72.6% 90.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.29e-01 100.0% 57.9%
3737401 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 43.0 3.84e-01 75.8% 54.4%
3282002 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 52.0 3.53e-01 98.4% 71.1%
3257922 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.59 50.0 4.36e-01 100.0% 62.1%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.86e-01 91.9% 100.0%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.25e-01 79.0% 83.6%
3199835 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 4.22e-01 85.5% 100.0%
3190184 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.58 39.0 3.48e-01 71.0% 65.3%
3600502 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 45.0 2.83e-01 85.5% 43.1%
3743973 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 43.0 4.03e-01 83.9% 80.0%
3219424 5.1.4.585 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29539, PF29566 0.57 45.0 2.69e-01 88.7% 16.4%
3245227 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.57 45.0 2.92e-01 88.7% 21.3%
4545531 220.1.1.255 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_10 0.57 39.0 3.65e-01 72.6% 83.7%
3208578 76.1.1.7 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › DUF7600 0.57 39.0 3.17e-01 72.6% 73.6%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 46.0 4.47e-01 100.0% 84.3%
3486495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 3.20e-01 95.2% 31.4%
3254075 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 43.0 2.71e-01 87.1% 18.3%
3804520 5.1.4.56 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 0.55 46.0 2.83e-01 96.8% 77.4%
5009633 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.57e-01 79.0% 94.4%
4934826 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 40.0 2.65e-01 82.3% 35.6%
5040230 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 42.0 4.23e-01 98.4% 86.2%
1031128 11.1.4.26 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4458 0.54 42.0 3.60e-01 87.1% 92.4%
3213116 5.1.4.449 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_WDR5 0.54 45.0 2.89e-01 96.8% 79.7%
3538071 5.1.4.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.54 42.0 2.66e-01 90.3% 17.0%
4964421 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 43.0 4.25e-01 98.4% 89.2%
3242245 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.53 36.0 3.60e-01 71.0% 93.8%
3407369 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 43.0 2.67e-01 90.3% 94.7%
3258463 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.27e-01 100.0% 100.0%
3885050 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.53 43.0 3.26e-01 96.8% 34.3%
3436556 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.53 38.0 3.64e-01 80.6% 100.0%
3774821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.36e-01 96.8% 100.0%
3684267 5.1.10.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RPE65 0.52 38.0 3.04e-01 79.0% 49.2%
5051523 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 42.0 3.48e-01 95.2% 97.5%
4928365 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.70e-01 88.7% 90.5%
3964215 897.2.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › Adhesin_E 0.50 41.0 3.41e-01 93.5% 71.3%