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NC_055921.1__YP_010115040.1__KNV79_gp30__00030
Bact-VirNC_055921.1__YP_010115040.1__KNV79_gp30__00030
Identity
- Accession:
- NC_055921 ↗
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Schitoviridae›
Triduovirus›
Salmonella_phage_vB_SalP_TR2
TaxID: 2812854
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-125
Domain cluster:
rep: IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_10000001118__D5-116
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.65 | 26.0 | 3.07e-01 | 87.7% | 50.6% |
| 3mzkB01 | 6.20.50.30 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.61 | 22.0 | 3.54e-01 | 86.0% | 92.1% |
| 2e5wA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.60 | 30.0 | 4.17e-01 | 95.6% | 100.0% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 27.0 | 3.29e-01 | 94.7% | 66.2% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 34.0 | 3.80e-01 | 86.0% | 72.2% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 29.0 | 3.74e-01 | 94.7% | 85.5% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.58 | 31.0 | 4.14e-01 | 98.2% | 100.0% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.58 | 27.0 | 3.97e-01 | 93.0% | 100.0% |
| 1uirA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.57 | 27.0 | 3.79e-01 | 94.7% | 96.2% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.56 | 29.0 | 3.71e-01 | 78.1% | 96.5% |
| 2b2cA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.55 | 31.0 | 4.03e-01 | 98.2% | 98.4% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 28.0 | 3.47e-01 | 86.8% | 82.6% |
| 2ymsC00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 33.0 | 4.12e-01 | 100.0% | 97.3% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.53 | 40.0 | 4.03e-01 | 92.1% | 78.0% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.53 | 28.0 | 3.71e-01 | 86.0% | 93.8% |
| 1pg5B02 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.53 | 27.0 | 3.52e-01 | 95.6% | 94.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3328685 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.62 | 31.0 | 4.00e-01 | 98.2% | 84.6% |
| 5041849 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.62 | 30.0 | 4.33e-01 | 99.1% | 100.0% |
| 3987332 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.62 | 30.0 | 4.33e-01 | 95.6% | 100.0% |
| 5013328 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.59 | 31.0 | 4.16e-01 | 98.2% | 96.7% |
| 4336845 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.59 | 30.0 | 4.01e-01 | 96.5% | 93.3% |
| 4250402 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 25.0 | 3.75e-01 | 88.6% | 100.0% |
| 3973362 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.57 | 30.0 | 3.54e-01 | 99.1% | 72.5% |
| 4854908 | 5.1.4.325 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30552 | 0.57 | 34.0 | 4.18e-01 | 98.2% | 95.7% |
| 3352562 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.57 | 28.0 | 3.27e-01 | 100.0% | 65.0% |
| 1030876 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.55 | 31.0 | 3.93e-01 | 89.5% | 91.4% |