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NC_056724.1__YP_010133263.1__K3164_gp43__00043

Bact-Vir

NC_056724.1__YP_010133263.1__K3164_gp43__00043

Identity

Accession:
NC_056724 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sandinevirus› Lactococcus_phage_BK5-T

TaxID: 31754

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-83
PDB
Domain cluster: rep: OP328422.1__UXR28985.1__X__00012__D5-71
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 44.0 4.81e-01 100.0% 69.7%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.72 44.0 4.97e-01 100.0% 83.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 41.0 4.62e-01 98.8% 75.0%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.67 53.0 3.53e-01 86.6% 55.7%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.45e-01 100.0% 70.1%
2okxA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 41.0 3.27e-01 74.4% 65.5%
1d0nA03 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 38.0 3.42e-01 70.7% 82.6%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 3.81e-01 100.0% 78.5%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.56 46.0 3.73e-01 92.7% 80.1%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.24e-01 89.0% 90.2%
1dfxA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.53 44.0 3.82e-01 90.2% 63.2%
2e9wA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 4.39e-01 90.2% 88.1%
5aq0B00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.52 41.0 4.17e-01 98.8% 86.6%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 38.0 3.36e-01 80.5% 87.7%
4a5wA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.85e-01 87.8% 98.1%
2yn3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 4.17e-01 92.7% 94.4%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 42.0 3.24e-01 91.5% 53.0%
6grqA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.95e-01 91.5% 93.9%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 41.0 4.16e-01 97.6% 94.9%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 38.0 2.92e-01 84.1% 81.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.73 44.0 4.25e-01 100.0% 52.6%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 39.0 4.73e-01 100.0% 95.8%
5055297 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.76e-01 87.8% 90.6%
3253366 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.50e-01 91.5% 94.0%
4959077 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.52e-01 100.0% 98.4%
4947927 7.1.1.32 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › Peptidase_M50 0.57 50.0 4.51e-01 100.0% 74.8%
5081495 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 4.23e-01 95.1% 75.0%
5062618 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.56 46.0 4.21e-01 90.2% 80.9%
4970624 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.55 46.0 2.80e-01 93.9% 27.0%
5061187 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.55 45.0 4.44e-01 90.2% 87.8%
5046075 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 4.11e-01 90.2% 86.3%
5055776 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 4.35e-01 90.2% 100.0%
3269322 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 41.0 3.32e-01 90.2% 94.7%
4165761 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.51 42.0 3.23e-01 91.5% 59.0%
5041937 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.76e-01 87.8% 93.3%
3892160 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.96e-01 87.8% 93.3%
3603390 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 4.34e-01 97.6% 98.8%
5062073 11.1.1.246 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.50 42.0 4.05e-01 92.7% 93.7%
3519515 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.50 40.0 3.11e-01 87.8% 50.3%