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NC_060131.1__YP_010245981.1__L3Y19_gp098__00125

Bact-Vir

NC_060131.1__YP_010245981.1__L3Y19_gp098__00125

Identity

Accession:
NC_060131 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-54
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.94 69.0 6.94e-01 81.5% 76.4%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 63.0 5.83e-01 75.9% 60.6%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 61.0 6.08e-01 79.6% 73.2%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 60.0 6.22e-01 75.9% 78.4%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 59.0 6.38e-01 81.5% 86.7%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 58.0 6.31e-01 72.2% 90.9%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.84 67.0 5.40e-01 87.0% 47.5%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 59.0 5.93e-01 74.1% 74.1%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.83 56.0 4.62e-01 70.4% 41.5%
2oceA01 1.10.10.650 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like 0.82 61.0 4.72e-01 79.6% 38.1%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 63.0 5.89e-01 96.3% 72.7%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.76 58.0 4.62e-01 83.3% 42.2%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 5.30e-01 77.8% 72.9%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 4.69e-01 70.4% 57.6%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 49.0 4.75e-01 70.4% 61.7%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.73 55.0 4.44e-01 81.5% 87.4%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.72 59.0 5.54e-01 94.4% 73.5%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 55.0 5.17e-01 81.5% 70.8%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.71 52.0 5.23e-01 79.6% 76.8%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.71 53.0 3.56e-01 79.6% 53.4%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.70 59.0 4.55e-01 96.3% 42.9%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.90e-01 75.9% 80.0%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.68 46.0 4.83e-01 70.4% 84.8%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 45.0 4.86e-01 72.2% 97.8%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 49.0 4.39e-01 85.2% 56.6%
2ip2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 4.83e-01 96.3% 100.0%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 4.76e-01 96.3% 97.7%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.31e-01 77.8% 57.5%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 3.86e-01 77.8% 92.9%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.53e-01 81.5% 67.7%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 3.91e-01 75.9% 100.0%
2xrnB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 4.52e-01 81.5% 68.8%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 54.0 3.99e-01 100.0% 61.3%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 54.0 3.67e-01 98.1% 60.6%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 4.40e-01 74.1% 82.5%
3npiB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 44.0 3.05e-01 77.8% 25.7%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.06e-01 100.0% 48.8%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.39e-01 98.1% 93.6%
2dg8D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 50.0 3.60e-01 98.1% 73.4%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.24e-01 88.9% 97.5%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 44.0 4.03e-01 79.6% 60.0%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 3.61e-01 87.0% 39.2%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 3.64e-01 98.1% 55.6%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 44.0 3.84e-01 83.3% 53.7%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.59e-01 75.9% 100.0%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.53 38.0 3.62e-01 75.9% 64.2%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.91e-01 100.0% 87.8%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.52e-01 81.5% 100.0%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943227 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.96 68.0 7.49e-01 77.8% 88.9%
4994121 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.94 64.0 7.35e-01 70.4% 95.0%
4385054 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 65.0 7.44e-01 74.1% 100.0%
4002905 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 65.0 6.06e-01 75.9% 61.5%
4939690 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.92 66.0 5.26e-01 75.9% 41.0%
3409145 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.91 63.0 6.59e-01 72.2% 78.0%
5020331 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 65.0 6.03e-01 74.1% 61.5%
4008959 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 84.0 8.37e-01 100.0% 98.2%
5038587 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.91 65.0 6.22e-01 74.1% 66.7%
3411416 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 63.0 6.86e-01 75.9% 88.6%
3904156 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 64.0 6.92e-01 75.9% 88.9%
3988724 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 65.0 6.26e-01 75.9% 68.3%
3590732 101.1.1.364 alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 0.90 62.0 6.75e-01 75.9% 86.7%
3857628 101.1.3.29 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › CENP-B_N 0.89 63.0 5.87e-01 77.8% 61.5%
5063318 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.89 71.0 7.09e-01 85.2% 83.6%
4008046 101.1.1.348 alpha arrays › HTH › HTH › Three-helical HTH › PF30461 0.89 60.0 6.23e-01 70.4% 76.0%
3922450 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 60.0 6.71e-01 70.4% 95.0%
3753093 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.88 63.0 5.85e-01 75.9% 61.5%
4987653 101.1.2.139 alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.88 59.0 6.43e-01 70.4% 84.4%
5024511 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 62.0 6.48e-01 75.9% 80.0%
3589359 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.88 62.0 7.04e-01 75.9% 100.0%
5028266 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 61.0 5.90e-01 75.9% 66.1%
4198219 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 62.0 6.73e-01 75.9% 88.9%
4334657 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.88 62.0 6.72e-01 75.9% 88.9%
4952293 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.88 59.0 6.63e-01 70.4% 95.0%
5030781 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 59.0 6.70e-01 70.4% 95.0%
3210747 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.87 62.0 6.70e-01 75.9% 88.9%
5077769 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.87 66.0 6.84e-01 81.5% 88.0%
5074940 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.87 62.0 6.17e-01 75.9% 72.7%
4961899 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.87 63.0 5.88e-01 75.9% 63.1%
3794969 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 60.0 6.25e-01 75.9% 78.0%
3989075 101.1.3.11 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_ISL3 0.86 58.0 6.62e-01 70.4% 100.0%
3976506 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.86 58.0 5.16e-01 70.4% 50.7%
4964802 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 66.0 6.37e-01 81.5% 73.3%
3932988 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 61.0 6.08e-01 75.9% 72.7%
5016985 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 58.0 6.27e-01 70.4% 84.4%
3544647 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.86 60.0 5.67e-01 75.9% 61.5%
5072014 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.86 72.0 6.37e-01 90.7% 66.7%
4479119 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.85 64.0 6.44e-01 83.3% 78.2%
1035813 101.1.6.2 alpha arrays › HTH › HTH › TrpR › HTH_7 0.85 61.0 6.24e-01 79.6% 78.8%
3256356 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 60.0 5.65e-01 74.1% 62.5%
3693312 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 61.0 5.92e-01 75.9% 71.7%
3565285 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.84 61.0 5.70e-01 77.8% 63.1%
139963 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 59.0 5.93e-01 74.1% 74.1%
4990647 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 60.0 6.03e-01 75.9% 74.5%
4008322 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.84 60.0 6.02e-01 75.9% 74.5%
3587017 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.83 56.0 6.04e-01 70.4% 86.7%
5030780 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.83 60.0 6.25e-01 77.8% 84.0%
5022370 101.1.1.9 alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 0.83 56.0 4.85e-01 72.2% 47.5%
4979402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 58.0 5.59e-01 75.9% 66.7%
3962903 101.1.2.486 alpha arrays › HTH › HTH › winged helix domain › HTH_58 0.82 56.0 6.24e-01 74.1% 97.5%
3066183 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.82 57.0 4.55e-01 77.8% 38.1%
5053505 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.81 63.0 6.56e-01 85.2% 92.0%
3283589 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.81 59.0 6.11e-01 77.8% 84.0%
4963466 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.81 54.0 5.82e-01 72.2% 84.4%
4031756 101.1.2.645 alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.81 53.0 4.54e-01 70.4% 43.5%
3971636 101.28.1.0 alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins 0.80 55.0 6.12e-01 72.2% 97.5%
3287232 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 74.0 6.51e-01 100.0% 73.3%
4944887 101.1.1.546 alpha arrays › HTH › HTH › Three-helical HTH › ThiN 0.80 68.0 5.27e-01 96.3% 44.2%
3786128 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 57.0 5.01e-01 75.9% 51.2%
3603739 101.1.1.498 alpha arrays › HTH › HTH › Three-helical HTH › LAGLIDADG_3 0.77 68.0 4.13e-01 98.1% 21.2%
5019249 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 55.0 4.72e-01 77.8% 48.2%
3668668 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.76 56.0 4.20e-01 77.8% 43.2%
5028009 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 51.0 5.67e-01 70.4% 95.0%
5055780 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 53.0 5.87e-01 74.1% 100.0%
3391053 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 51.0 5.42e-01 75.9% 88.9%
5060563 101.1.1.544 alpha arrays › HTH › HTH › Three-helical HTH › DUF1670 0.74 59.0 5.44e-01 88.9% 71.4%
5020571 101.1.1.101 alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.72 56.0 4.63e-01 88.9% 45.7%
5054427 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.72 59.0 4.41e-01 94.4% 57.2%