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NC_060133.1__YP_010246120.1__L3Y21_gp007__00007

Bact-Vir

NC_060133.1__YP_010246120.1__L3Y21_gp007__00007

Identity

Accession:
NC_060133 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nevillevirus› Gordonia_phage_Rabbitrun

TaxID: 2762280

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
D2 medium residues 54-176
PDB
Domain cluster: rep: JN564907.1__AEY69512.1__AH2_0001__00001__D14-132
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.65 23.0 3.62e-01 74.8% 77.8%
4qiwK00 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.60 28.0 3.80e-01 73.2% 91.1%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 28.0 3.76e-01 85.4% 89.4%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.55 29.0 3.20e-01 79.7% 60.6%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 29.0 3.67e-01 80.5% 86.7%
1uswA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 41.0 3.25e-01 79.7% 90.4%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 32.0 3.88e-01 94.3% 94.7%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 24.0 3.32e-01 80.5% 84.4%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.52 35.0 3.32e-01 88.6% 57.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 29.0 3.66e-01 84.6% 94.4%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.51 45.0 4.05e-01 97.6% 89.9%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 40.0 3.50e-01 85.4% 74.5%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5068435 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.63 30.0 4.25e-01 87.8% 100.0%
1214708 211.1.1.16 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Bleomycin_resist_prot_dom 0.62 32.0 3.97e-01 90.2% 80.3%
3612090 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 28.0 3.97e-01 79.7% 91.7%
4927267 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.60 24.0 3.79e-01 81.3% 100.0%
5072324 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.54 33.0 3.71e-01 84.6% 78.9%
4237612 3006.1.1.6 ↗ a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › CPSF73-100_C 0.53 36.0 4.17e-01 79.7% 100.0%
3169357 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 37.0 3.97e-01 74.8% 87.3%
3611509 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.51 39.0 2.68e-01 80.5% 90.4%
3655368 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 31.0 3.80e-01 96.7% 98.7%
5054047 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 30.0 3.80e-01 81.3% 98.7%