NC_060133.1__YP_010246144.1__L3Y21_gp031__00031

Bact-Vir

Identity

73.5 mean pLDDT

Heunggongvirae› Uroviricota› Caudoviricetes› Nevillevirus› Gordonia_phage_Rabbitrun

TaxID: 2762280

View cluster (4 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 99-158

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ctwB00	1.10.8.930	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465	0.69	51.0	4.07e-01	80.0%	45.8%
4pc9A00	3.40.190.170	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7	0.61	52.0	3.40e-01	100.0%	50.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3220865	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.63	45.0	4.51e-01	91.7%	75.0%
3471666	190.1.1.1 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box	0.61	49.0	4.49e-01	85.0%	82.7%
4028444	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.61	52.0	4.27e-01	100.0%	65.8%

D2 medium residues 7-94

PDB

Domain cluster: rep: NC_054789.1__YP_010061983.1__KIV64_gp63__00028__D10-79

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10910.15 best	Phage_gene29	43.2	5.90e-11	94.3%	66.1%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2z73B01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	45.0	3.09e-01	96.6%	66.2%
1i07A00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.53	32.0	3.58e-01	84.1%	86.4%
2wa0A01	1.10.10.1200	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif	0.52	37.0	3.61e-01	76.1%	75.2%
3ezjA02	3.30.1370.120	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.52	25.0	2.80e-01	90.9%	52.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3249252	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.55	45.0	3.15e-01	93.2%	54.5%
3908432	4291.1.1.1 ↗	beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP	0.50	43.0	2.86e-01	98.9%	51.1%