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NC_060133.1__YP_010246165.1__L3Y21_gp052__00052

Bact-Vir

NC_060133.1__YP_010246165.1__L3Y21_gp052__00052

Identity

Accession:
NC_060133 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-85
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.77 63.0 5.99e-01 87.8% 89.7%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.76 62.0 5.85e-01 87.8% 93.2%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.76 52.0 3.20e-01 71.6% 13.3%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.74 60.0 5.56e-01 87.8% 83.2%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.74 62.0 5.86e-01 91.9% 91.0%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.73 50.0 3.20e-01 74.3% 15.6%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 51.0 3.24e-01 75.7% 16.5%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.71 62.0 5.82e-01 97.3% 96.7%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.71 56.0 5.26e-01 87.8% 88.0%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 49.0 3.04e-01 71.6% 14.2%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.69 47.0 2.98e-01 70.3% 16.6%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 43.0 2.72e-01 87.8% 12.9%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.65 49.0 3.41e-01 91.9% 25.6%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 43.0 2.77e-01 89.2% 15.6%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 4.46e-01 94.6% 78.1%
1k82B01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.62 48.0 4.08e-01 85.1% 72.4%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.22e-01 90.5% 20.2%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 34.0 3.55e-01 85.1% 57.1%
1wfqA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 37.0 3.78e-01 97.3% 64.4%
5o46A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 4.27e-01 94.6% 81.6%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.58 42.0 2.86e-01 78.4% 63.6%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 44.0 2.74e-01 83.8% 28.7%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.57 41.0 3.06e-01 77.0% 88.4%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 43.0 3.31e-01 83.8% 76.6%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 3.84e-01 95.9% 67.1%
5w36B01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.56 38.0 3.21e-01 70.3% 79.9%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 44.0 3.40e-01 89.2% 76.1%
2o3gA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 42.0 4.18e-01 83.8% 100.0%
2ch9A01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.94e-01 94.6% 84.1%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 43.0 3.02e-01 86.5% 80.0%
4pibA00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.53 40.0 3.09e-01 82.4% 82.8%
2ovsA00 2.40.128.380 Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR 0.53 38.0 3.27e-01 75.7% 48.3%
4q52A00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.53 40.0 3.10e-01 83.8% 86.3%
2m38A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.13e-01 75.7% 85.2%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.32e-01 74.3% 98.1%
1efpB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 31.0 2.16e-01 77.0% 17.5%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.68e-01 95.9% 88.8%
5bmnA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 41.0 3.95e-01 91.9% 78.3%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.51 43.0 2.94e-01 98.6% 68.8%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 35.0 2.94e-01 74.3% 85.6%
3gldA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.50e-01 97.3% 97.9%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 40.0 3.27e-01 86.5% 53.6%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 39.0 3.45e-01 89.2% 81.5%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 2.98e-01 83.8% 47.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4887373 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 63.0 6.19e-01 83.8% 94.9%
4968316 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 66.0 6.22e-01 89.2% 90.9%
4966983 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.79 62.0 6.06e-01 83.8% 96.2%
3972934 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.79 65.0 5.71e-01 87.8% 88.6%
5071213 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.78 62.0 6.07e-01 85.1% 93.8%
4948982 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.78 63.0 5.93e-01 87.8% 91.1%
5080427 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.77 63.0 6.17e-01 87.8% 93.8%
4968774 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.77 62.0 6.17e-01 85.1% 98.7%
4969644 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.77 62.0 5.85e-01 87.8% 94.4%
4937462 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.77 63.0 5.74e-01 87.8% 90.5%
4962176 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.76 61.0 5.93e-01 85.1% 96.2%
5007067 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.76 62.0 5.80e-01 87.8% 95.6%
3775274 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.76 52.0 3.17e-01 70.3% 24.3%
4928181 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.75 62.0 5.89e-01 87.8% 88.2%
4933908 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.75 59.0 5.70e-01 85.1% 94.1%
4999510 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.75 61.0 5.81e-01 87.8% 92.9%
4941220 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.75 64.0 6.24e-01 91.9% 93.8%
5063859 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.75 59.0 5.78e-01 85.1% 95.0%
4984297 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.75 61.0 5.68e-01 87.8% 87.8%
3912292 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.75 51.0 3.20e-01 70.3% 28.3%
3602698 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.74 60.0 5.77e-01 87.8% 94.1%
4966674 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.74 60.0 5.78e-01 87.8% 90.6%
5014147 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.74 63.0 6.18e-01 91.9% 97.5%
138730 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.74 62.0 5.86e-01 91.9% 91.0%
3586933 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.74 62.0 5.72e-01 91.9% 98.9%
5014619 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.74 59.0 5.82e-01 87.8% 95.0%
3479960 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.73 51.0 3.21e-01 71.6% 29.0%
5032565 4312.1.1.10 a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.73 59.0 5.64e-01 87.8% 94.1%
5005256 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.73 61.0 5.87e-01 91.9% 94.1%
5007064 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.72 58.0 5.79e-01 86.5% 96.0%
3238618 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.71 53.0 3.26e-01 77.0% 28.6%
4967722 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.71 60.0 5.86e-01 91.9% 97.5%
5016951 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.70 57.0 5.23e-01 87.8% 86.3%
3740914 5.1.4.80 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.70 48.0 3.02e-01 70.3% 21.9%
4545587 5.1.3.154 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.70 50.0 3.05e-01 74.3% 33.0%
3599756 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.70 48.0 2.95e-01 71.6% 12.6%
3990350 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.69 43.0 2.81e-01 87.8% 14.9%
5082625 4312.1.1.7 a+b two layers › RelE-like › RelE-like › RelE-like › HigB_toxin 0.69 55.0 5.20e-01 87.8% 94.4%
5018720 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.69 58.0 5.53e-01 91.9% 94.1%
5029836 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.69 57.0 5.63e-01 91.9% 93.8%
5029202 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.68 56.0 5.40e-01 91.9% 87.1%
3479152 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 46.0 2.97e-01 70.3% 25.8%
3446490 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.67 49.0 3.09e-01 87.8% 14.9%
3403473 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.67 51.0 3.21e-01 87.8% 16.2%
3774584 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 47.0 2.96e-01 77.0% 14.7%
3559299 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 57.0 4.69e-01 93.2% 66.2%
3928216 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 52.0 4.30e-01 89.2% 48.5%
3455522 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 47.0 3.06e-01 90.5% 16.8%
3635615 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 57.0 4.20e-01 100.0% 73.0%
3565380 5.1.4.623 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TPR_GEMI5 0.61 47.0 2.64e-01 83.8% 91.8%
3246560 5.1.4.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.61 49.0 3.01e-01 90.5% 14.4%
3629277 5.1.5.89 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.60 47.0 2.91e-01 90.5% 14.5%
3583260 220.1.1.187 beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.60 52.0 4.46e-01 98.6% 60.9%
3932473 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 44.0 2.78e-01 91.9% 15.1%
3898950 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 3.83e-01 98.6% 54.8%
4032478 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 37.0 3.93e-01 83.8% 80.0%
5000881 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 42.0 3.32e-01 85.1% 63.2%
4941285 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 36.0 3.78e-01 85.1% 77.1%
3604153 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.51 39.0 3.88e-01 91.9% 77.5%
4821446 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.51 37.0 3.21e-01 78.4% 70.0%
4995617 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.50 40.0 3.81e-01 86.5% 75.3%