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NC_060133.1__YP_010246188.1__L3Y21_gp075__00075

Bact-Vir

NC_060133.1__YP_010246188.1__L3Y21_gp075__00075

Identity

Accession:
NC_060133 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-111
PDB
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.91 73.0 7.54e-01 100.0% 89.0%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.89 66.0 6.93e-01 100.0% 83.5%
1z9fA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.89 65.0 7.15e-01 100.0% 91.0%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.88 67.0 7.29e-01 100.0% 93.3%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.86 69.0 7.07e-01 100.0% 86.5%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.84 65.0 6.47e-01 100.0% 78.0%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.82 61.0 6.45e-01 100.0% 85.4%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.82 65.0 7.00e-01 100.0% 95.6%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.82 59.0 5.87e-01 100.0% 72.5%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.82 68.0 7.04e-01 100.0% 91.2%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 69.0 6.79e-01 100.0% 85.6%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 66.0 6.85e-01 100.0% 91.9%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 72.0 7.31e-01 100.0% 96.2%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 66.0 6.75e-01 100.0% 89.3%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 59.0 5.94e-01 100.0% 77.4%
4pofA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 61.0 6.22e-01 100.0% 83.7%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 65.0 6.49e-01 100.0% 87.3%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 69.0 6.81e-01 100.0% 92.0%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 59.0 6.37e-01 99.1% 96.7%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 54.0 5.53e-01 100.0% 77.5%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 62.0 6.27e-01 100.0% 90.5%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 65.0 6.43e-01 100.0% 91.9%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 49.0 4.43e-01 100.0% 54.1%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 49.0 4.95e-01 100.0% 73.4%
1fnuA01 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 46.0 5.18e-01 100.0% 97.5%
4hikA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 59.0 5.37e-01 100.0% 77.5%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 33.0 3.90e-01 100.0% 77.8%
1sjyA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 37.0 3.27e-01 93.5% 48.7%
1vc9A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 33.0 3.19e-01 93.5% 56.6%
1ewfA02 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.51 45.0 3.31e-01 97.2% 37.0%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 3.89e-01 90.7% 72.0%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4238279 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.91 82.0 8.02e-01 100.0% 87.8%
3365669 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.90 77.0 7.68e-01 100.0% 87.3%
2845667 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.89 73.0 7.30e-01 100.0% 83.5%
174115 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.89 67.0 7.46e-01 100.0% 97.6%
4626934 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.85 75.0 7.57e-01 100.0% 93.3%
3467519 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.84 70.0 7.11e-01 93.5% 89.5%
159268 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.83 68.0 5.31e-01 100.0% 44.2%
3375524 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.82 68.0 6.56e-01 100.0% 77.5%
3593304 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 61.0 5.71e-01 100.0% 65.6%
3448049 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.81 68.0 6.95e-01 100.0% 89.5%
4232994 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.81 69.0 6.88e-01 100.0% 87.3%
3814285 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.80 70.0 6.93e-01 100.0% 88.2%
3839607 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.80 72.0 6.98e-01 100.0% 85.6%
381191 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.80 66.0 6.75e-01 100.0% 89.3%
3616890 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.80 69.0 6.79e-01 100.0% 86.1%
222748 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.80 63.0 6.82e-01 97.2% 96.7%
4277262 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.79 70.0 6.78e-01 100.0% 83.9%
4264144 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.79 66.0 6.74e-01 100.0% 88.6%
4137219 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.79 68.0 7.03e-01 100.0% 95.0%
4170378 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.79 70.0 6.87e-01 100.0% 87.0%
4032979 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.79 69.0 6.82e-01 100.0% 88.2%
2330653 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.79 60.0 6.41e-01 100.0% 89.4%
3611898 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 65.0 6.16e-01 100.0% 74.4%
3247575 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 61.0 5.88e-01 100.0% 72.5%
4068016 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.79 67.0 6.80e-01 100.0% 91.4%
4327241 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.79 65.0 6.85e-01 100.0% 94.9%
3608487 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 65.0 6.63e-01 100.0% 89.5%
4122961 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.78 66.0 6.84e-01 100.0% 95.0%
4044404 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.78 70.0 7.14e-01 100.0% 97.1%
4029733 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 59.0 5.77e-01 100.0% 73.9%
3473720 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.77 66.0 6.56e-01 100.0% 88.2%
4478491 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.77 69.0 6.96e-01 100.0% 95.2%
317 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.77 65.0 6.49e-01 100.0% 87.3%
4296288 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.76 67.0 6.81e-01 100.0% 94.3%
2541776 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.76 64.0 6.37e-01 100.0% 86.2%
4319566 2.1.1.290 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29066 0.76 66.0 5.87e-01 100.0% 67.6%
3413189 2.1.1.141 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.76 69.0 5.87e-01 100.0% 63.0%
3991931 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.75 61.0 5.87e-01 100.0% 75.8%
3690510 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.75 65.0 6.47e-01 100.0% 89.1%
3924081 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.75 67.0 6.10e-01 100.0% 72.9%
3215667 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.75 69.0 6.58e-01 100.0% 85.8%
3880555 2.1.1.290 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29066 0.75 68.0 6.17e-01 100.0% 73.6%
4025160 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.75 70.0 6.63e-01 100.0% 87.2%
294 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.75 68.0 6.08e-01 100.0% 71.7%
3441179 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.75 63.0 5.95e-01 100.0% 76.0%
2035523 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.74 66.0 6.48e-01 100.0% 89.3%
3995685 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.74 64.0 6.45e-01 100.0% 91.7%
3600626 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 61.0 6.34e-01 100.0% 94.0%
3716709 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 65.0 6.17e-01 100.0% 82.1%
3374948 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.72 57.0 5.90e-01 99.1% 89.0%
3719465 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.72 59.0 5.88e-01 100.0% 84.5%
3707760 2.1.1.225 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.72 66.0 6.35e-01 100.0% 88.3%
3783432 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.71 63.0 6.37e-01 100.0% 94.3%
3667392 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.71 66.0 6.44e-01 100.0% 94.8%
3263786 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 60.0 5.49e-01 100.0% 70.4%
4024258 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 61.0 5.89e-01 100.0% 83.3%
3599731 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 64.0 5.28e-01 100.0% 62.0%
3716787 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 55.0 5.46e-01 100.0% 82.7%
3701262 2.1.1.225 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.67 61.0 5.73e-01 100.0% 86.9%
5074611 2.26.1.1 beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.58 41.0 4.59e-01 99.1% 97.5%
4171257 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 37.0 4.10e-01 98.1% 82.4%
4341398 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 38.0 4.06e-01 99.1% 80.0%
4987629 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 42.0 3.00e-01 97.2% 27.4%
4230153 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 36.0 4.02e-01 99.1% 83.5%
3638345 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 46.0 3.12e-01 100.0% 93.1%
3704007 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.51 43.0 3.40e-01 94.4% 64.7%