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NC_060133.1__YP_010246224.1__L3Y21_gp119__00111
Bact-VirNC_060133.1__YP_010246224.1__L3Y21_gp119__00111
Identity
- Accession:
- NC_060133 ↗
- Kingdom:
- phage
Quality
85.2
mean pLDDT
Taxonomy
TaxID: 2762280
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-58
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ungC03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.68 | 42.0 | 3.19e-01 | 98.3% | 27.1% |
| 6dnwA01 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.65 | 36.0 | 2.88e-01 | 87.9% | 25.2% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.63 | 57.0 | 4.46e-01 | 100.0% | 48.7% |
| 2yykA01 | 1.10.3140.10 | Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 | 0.59 | 45.0 | 3.54e-01 | 94.8% | 37.2% |
| 2ph7A01 | 1.10.3400.10 | Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like | 0.58 | 38.0 | 3.13e-01 | 98.3% | 32.3% |
| 2hezA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.58 | 41.0 | 2.59e-01 | 100.0% | 13.7% |
| 2d4aA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.58 | 43.0 | 3.20e-01 | 94.8% | 30.0% |
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 49.0 | 3.86e-01 | 100.0% | 67.7% |
| 7tjbA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.57 | 48.0 | 3.38e-01 | 100.0% | 42.2% |
| 1dvoA00 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.56 | 43.0 | 3.24e-01 | 86.2% | 32.2% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 36.0 | 2.94e-01 | 94.8% | 32.0% |
| 3nb0B03 | 6.10.260.10 | Special › Helix non-globular › F1FO ATP Synthase › | 0.56 | 44.0 | 3.92e-01 | 93.1% | 60.7% |
| 1yf2A02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.56 | 45.0 | 3.70e-01 | 94.8% | 48.6% |
| 1v57A03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 43.0 | 3.27e-01 | 86.2% | 43.8% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 40.0 | 4.02e-01 | 87.9% | 75.0% |
| 2pvaA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.55 | 38.0 | 2.42e-01 | 100.0% | 13.0% |
| 1k8kD02 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 44.0 | 3.51e-01 | 98.3% | 48.9% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.52 | 46.0 | 3.96e-01 | 100.0% | 80.9% |
| 5eo6B00 | 3.40.1500.10 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic | 0.52 | 41.0 | 2.77e-01 | 100.0% | 64.5% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 43.0 | 3.49e-01 | 89.7% | 48.6% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 41.0 | 3.49e-01 | 86.2% | 100.0% |
| 4cclA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.52 | 44.0 | 3.24e-01 | 100.0% | 61.9% |
| 1ib6A02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.51 | 38.0 | 2.83e-01 | 81.0% | 83.7% |
| 1gzsB00 | 1.10.4120.10 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain | 0.51 | 44.0 | 3.26e-01 | 100.0% | 63.6% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.51 | 41.0 | 2.99e-01 | 94.8% | 34.6% |
| 2zxiA03 | 1.10.10.1800 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA | 0.51 | 42.0 | 3.56e-01 | 91.4% | 62.9% |
| 2y3mA02 | 3.30.1370.130 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.51 | 36.0 | 3.65e-01 | 100.0% | 76.8% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 45.0 | 3.80e-01 | 100.0% | 82.5% |
| 1tzlA02 | 3.30.1920.50 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › | 0.50 | 30.0 | 2.98e-01 | 89.7% | 53.2% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001157 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.67 | 41.0 | 3.57e-01 | 89.7% | 42.4% |
| 3509208 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.64 | 37.0 | 3.35e-01 | 89.7% | 41.2% |
| 3479414 | 304.20.1.2 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 | 0.63 | 48.0 | 3.53e-01 | 82.8% | 69.4% |
| 5012054 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.60 | 38.0 | 3.65e-01 | 96.6% | 52.9% |
| 4998665 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.60 | 50.0 | 3.52e-01 | 100.0% | 27.8% |
| 4952170 | 3355.1.1.1 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Na_sulph_symp | 0.60 | 50.0 | 3.01e-01 | 100.0% | 23.5% |
| 4880604 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.59 | 43.0 | 3.20e-01 | 93.1% | 31.7% |
| 4172535 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 53.0 | 5.09e-01 | 98.3% | 84.6% |
| 5043712 | 2004.1.1.194 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 | 0.58 | 39.0 | 2.68e-01 | 70.7% | 19.6% |
| 4978597 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.58 | 46.0 | 3.35e-01 | 94.8% | 28.6% |
| 4810251 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.57 | 46.0 | 3.10e-01 | 93.1% | 52.5% |
| 4029283 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 41.0 | 2.82e-01 | 75.9% | 50.5% |
| 3971673 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.57 | 43.0 | 2.75e-01 | 100.0% | 17.4% |
| 3210725 | 109.4.1.2814 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, HEAT_GCN1, TPR_IMB1, TPR_IPO5 | 0.56 | 39.0 | 2.15e-01 | 82.8% | 3.9% |
| 4936323 | 4029.1.1.0 ↗ | a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like | 0.56 | 33.0 | 4.20e-01 | 86.2% | 100.0% |
| 2773715 | 4266.1.1.4 ↗ | alpha bundles › Hyaluronidase domain-like › Hyaluronidase post-catalytic domain-like › Hyaluronidase post-catalytic domain-like › Glyco_hydro_84_hel | 0.56 | 41.0 | 3.08e-01 | 79.3% | 32.4% |
| 3507720 | 4009.1.1.3 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › KTI12 | 0.56 | 48.0 | 4.07e-01 | 98.3% | 70.4% |
| 5051540 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.56 | 44.0 | 3.33e-01 | 93.1% | 83.0% |
| 5053794 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.55 | 44.0 | 3.38e-01 | 86.2% | 83.1% |
| 5014663 | 2004.1.1.85 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase | 0.55 | 45.0 | 2.91e-01 | 100.0% | 27.9% |
| 3636700 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.55 | 40.0 | 3.83e-01 | 79.3% | 74.3% |
| 3786942 | 109.4.1.1151 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HIR3_helical | 0.55 | 41.0 | 2.46e-01 | 79.3% | 11.7% |
| 4163138 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 44.0 | 4.25e-01 | 86.2% | 92.3% |
| 3530796 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.55 | 49.0 | 3.96e-01 | 94.8% | 55.0% |
| 4981980 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 46.0 | 3.70e-01 | 94.8% | 49.6% |
| 3406678 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 48.0 | 4.39e-01 | 94.8% | 73.3% |
| 4416214 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.54 | 48.0 | 4.17e-01 | 100.0% | 65.9% |
| 3896992 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 48.0 | 4.36e-01 | 94.8% | 73.3% |
| 4995220 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 45.0 | 3.67e-01 | 100.0% | 52.0% |
| 3937187 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 43.0 | 3.51e-01 | 87.9% | 47.3% |
| 3455476 | 389.1.3.0 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like | 0.53 | 43.0 | 4.42e-01 | 98.3% | 100.0% |
| 4457710 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 43.0 | 3.42e-01 | 89.7% | 44.2% |
| 4961372 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 45.0 | 3.96e-01 | 91.4% | 67.5% |
| 4972215 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.52 | 41.0 | 2.81e-01 | 86.2% | 87.6% |
| 5062471 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 43.0 | 3.52e-01 | 93.1% | 49.1% |
| 3579065 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.52 | 41.0 | 3.12e-01 | 100.0% | 46.7% |
| 3723257 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.52 | 43.0 | 3.83e-01 | 100.0% | 64.7% |
| 3697575 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.51 | 39.0 | 3.74e-01 | 86.2% | 70.0% |
| 5046816 | 102.1.4.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › Nop C-terminal domain › Transposase_20 | 0.51 | 44.0 | 3.52e-01 | 100.0% | 94.2% |
| 4320951 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.51 | 43.0 | 3.11e-01 | 100.0% | 31.4% |
| 3291096 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 43.0 | 4.48e-01 | 93.1% | 100.0% |
| 4490179 | 109.4.1.1289 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30856 | 0.51 | 39.0 | 2.51e-01 | 93.1% | 49.3% |
| 3686216 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.50 | 44.0 | 4.03e-01 | 96.6% | 76.0% |
| 4979123 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.50 | 44.0 | 3.10e-01 | 98.3% | 78.9% |
| 3411883 | 604.1.1.63 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 | 0.50 | 40.0 | 3.19e-01 | 87.9% | 68.3% |