←Back to structures
NC_060137.1__YP_010246663.1__L3Y25_gp004__00004
Bact-VirNC_060137.1__YP_010246663.1__L3Y25_gp004__00004
Identity
- Accession:
- NC_060137 ↗
- Kingdom:
- phage
Quality
73.6
mean pLDDT
Taxonomy
TaxID: 2653718
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-54
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7whfC02 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.58 | 47.0 | 3.81e-01 | 100.0% | 47.0% |
| 1e4eB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 48.0 | 3.46e-01 | 100.0% | 58.3% |
| 6ryvA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 48.0 | 4.48e-01 | 100.0% | 81.5% |
| 1ehiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 48.0 | 3.52e-01 | 100.0% | 63.9% |
| 4ic6C01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 42.0 | 3.50e-01 | 100.0% | 56.4% |
| 2qh7B01 | 3.40.5.90 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › CDGSH iron-sulfur domain, mitoNEET-type | 0.52 | 35.0 | 3.58e-01 | 90.0% | 72.3% |
| 2ww8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.51e-01 | 100.0% | 49.1% |
| 3kd4A02 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.52 | 40.0 | 3.07e-01 | 100.0% | 35.6% |
| 8a8oA01 | 3.90.700.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain | 0.51 | 42.0 | 3.44e-01 | 100.0% | 74.8% |
| 4lduA02 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.51 | 37.0 | 3.06e-01 | 84.0% | 64.2% |
| 3l2pA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.50 | 42.0 | 3.29e-01 | 100.0% | 58.3% |
| 2azpA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 37.0 | 2.75e-01 | 86.0% | 46.6% |
| 6cngA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.50 | 42.0 | 3.23e-01 | 100.0% | 68.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033337 | 302.2.1.0 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit | 0.61 | 51.0 | 4.02e-01 | 100.0% | 50.4% |
| 3325376 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.61 | 43.0 | 3.94e-01 | 88.0% | 55.7% |
| 3862518 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.59 | 50.0 | 4.93e-01 | 98.0% | 92.7% |
| 3404658 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 49.0 | 4.31e-01 | 100.0% | 68.8% |
| 3927505 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.57 | 46.0 | 4.13e-01 | 100.0% | 97.5% |
| 3306863 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.56 | 44.0 | 3.60e-01 | 100.0% | 46.3% |
| 4939763 | 832.1.1.0 ↗ | a+b three layers › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | 0.53 | 35.0 | 2.84e-01 | 70.0% | 73.6% |
| 3395164 | 11.1.1.447 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NDNF_C | 0.53 | 43.0 | 3.40e-01 | 100.0% | 65.6% |
| 3999518 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 42.0 | 3.26e-01 | 96.0% | 37.6% |
| 3451388 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 39.0 | 2.61e-01 | 96.0% | 38.2% |
| 4157284 | 9.7.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh | 0.51 | 40.0 | 3.24e-01 | 90.0% | 90.5% |
| 4034031 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.50 | 39.0 | 3.63e-01 | 88.0% | 90.8% |
| 4408389 | 11.1.1.335 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N | 0.50 | 40.0 | 3.36e-01 | 100.0% | 48.0% |
| 4940563 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.50 | 36.0 | 3.02e-01 | 80.0% | 84.0% |
| 3605638 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 41.0 | 3.56e-01 | 100.0% | 56.5% |
| 3320817 | 2004.1.1.174 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 | 0.50 | 39.0 | 2.54e-01 | 94.0% | 36.2% |