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NC_060137.1__YP_010246670.1__L3Y25_gp011__00011
Bact-VirNC_060137.1__YP_010246670.1__L3Y25_gp011__00011
Identity
- Accession:
- NC_060137 ↗
- Kingdom:
- phage
Quality
96.2
mean pLDDT
Taxonomy
TaxID: 2653718
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-107
Domain cluster:
rep: MT521992.1__QLF83352.1__SEA_NICEHOUSE_108__00108__D5-108
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12957.14 best | DUF3846 | 66.8 | 2.30e-18 | 99.0% | 92.2% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 32.0 | 3.74e-01 | 94.2% | 79.4% |
| 2rprA00 | 2.20.25.240 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 32.0 | 3.41e-01 | 77.9% | 65.5% |
| 5eqjB01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.55 | 32.0 | 3.70e-01 | 97.1% | 83.1% |
| 2pwyA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.54 | 30.0 | 3.89e-01 | 96.2% | 100.0% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 26.0 | 3.19e-01 | 94.2% | 72.7% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 30.0 | 3.63e-01 | 94.2% | 93.5% |
| 1i9gA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 30.0 | 3.53e-01 | 97.1% | 90.6% |
| 5ccbA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.51 | 30.0 | 3.45e-01 | 97.1% | 83.3% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.51 | 30.0 | 3.39e-01 | 97.1% | 81.9% |
| 3hi9D00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 32.0 | 3.49e-01 | 100.0% | 79.3% |
| 5w0hA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 31.0 | 3.51e-01 | 99.0% | 81.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3611608 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 68.0 | 4.84e-01 | 100.0% | 38.3% |
| 3282860 | 3380.1.1.0 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 | 0.56 | 32.0 | 3.61e-01 | 99.0% | 72.5% |
| 3598220 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 44.0 | 4.07e-01 | 89.4% | 90.0% |
| 3629627 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.54 | 35.0 | 3.93e-01 | 84.6% | 89.3% |
| 5029617 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.53 | 30.0 | 3.47e-01 | 94.2% | 84.6% |
| 4228206 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.51 | 36.0 | 3.95e-01 | 89.4% | 93.8% |
| 1030895 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.51 | 30.0 | 3.42e-01 | 97.1% | 85.3% |
| 3671146 | 280.1.1.1 ↗ | a+b two layers › Ribonuclease Rh-like › Ribonuclease Rh-like › Ribonuclease Rh-like › Ribonuclease_T2 | 0.51 | 35.0 | 2.90e-01 | 71.2% | 76.6% |