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NC_061418.1__YP_010297865.1__MOA67_gp273__00284

Bact-Vir

Identity

Accession:: NC_061418 ↗
Kingdom:: phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Siatvirus› Klebsiella_phage_KpLz-2_45

TaxID: 2698923

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-82

PDB

Domain cluster: rep: OP991903.1__WBF04756.1__X__00082__D8-82

CATH (30)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4r42A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.74	50.0	3.81e-01	70.7%	81.3%
2ykgA03	1.20.1320.30	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 ›	0.70	49.0	4.23e-01	74.4%	51.9%
4fvmA06	1.10.287.690	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain	0.69	40.0	4.96e-01	91.5%	97.9%
2yxhA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.69	37.0	3.35e-01	90.2%	37.2%
5z7qA00	1.20.1330.10	Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain	0.68	56.0	4.42e-01	91.5%	72.2%
7c1iA01	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.66	54.0	5.12e-01	90.2%	93.0%
2i0mA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.66	46.0	4.29e-01	74.4%	88.7%
3cskA02	3.30.540.30	Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 ›	0.63	53.0	4.29e-01	95.1%	77.8%
2rbdA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.63	44.0	3.64e-01	73.2%	88.7%
3a8pA02	6.10.140.680	Special › Helix non-globular › Helix Hairpins ›	0.61	49.0	4.39e-01	86.6%	63.2%
2lqgA00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.61	42.0	3.59e-01	72.0%	71.0%
3pasA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.61	54.0	4.05e-01	96.3%	54.2%
4gltA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.60	44.0	3.95e-01	100.0%	55.3%
3ezuA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.60	55.0	4.17e-01	100.0%	87.4%
4wpeA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.58	42.0	2.85e-01	91.5%	22.2%
4p9tA01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.58	45.0	4.05e-01	85.4%	85.8%
2chnB03	1.20.58.460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like	0.58	42.0	3.26e-01	75.6%	45.6%
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	38.0	4.12e-01	91.5%	80.3%
2np5D00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.57	43.0	3.52e-01	80.5%	72.8%
4iloA00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.57	48.0	3.51e-01	93.9%	86.4%
3kkbA00	1.20.120.880	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain	0.56	49.0	4.31e-01	100.0%	86.5%
2ib0A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.54	45.0	3.82e-01	100.0%	54.8%
3na7A00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	43.0	3.13e-01	89.0%	98.7%
7w5lA01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.53	45.0	3.28e-01	100.0%	70.9%
3e98B00	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.52	45.0	3.59e-01	97.6%	82.2%
8d7hD01	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.52	44.0	3.47e-01	100.0%	43.9%
2itbB00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.52	47.0	3.52e-01	100.0%	47.0%
1wa8A00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.50	38.0	3.62e-01	90.2%	66.7%
4i3vA01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.50	43.0	3.10e-01	100.0%	71.7%
7cj3A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.50	39.0	2.87e-01	87.8%	46.1%

ECOD (25)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4042986	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.79	40.0	3.73e-01	91.5%	40.0%
4429835	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.74	42.0	3.98e-01	91.5%	47.0%
3949608	5069.1.1.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes	0.71	59.0	5.16e-01	91.5%	95.2%
4541659	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.70	42.0	3.90e-01	91.5%	47.6%
3409131	3930.1.1.0 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase	0.69	49.0	3.92e-01	74.4%	45.0%
3233462	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.69	48.0	4.16e-01	73.2%	57.0%
5035115	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.67	60.0	4.82e-01	100.0%	86.3%
3331738	633.4.1.0 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor	0.65	45.0	4.17e-01	72.0%	86.7%
3289474	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.65	47.0	4.54e-01	76.8%	87.4%
3776400	192.5.1.1 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1	0.65	43.0	4.40e-01	91.5%	70.0%
3908006	601.2.1.18 ↗	alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › PF27107	0.64	53.0	4.33e-01	92.7%	91.3%
3962847	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.61	42.0	4.10e-01	70.7%	91.1%
4940650	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.60	39.0	3.30e-01	91.5%	40.0%
4951992	5041.1.1.55 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › DUF1622	0.60	42.0	3.93e-01	73.2%	93.0%
3429223	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.59	42.0	3.47e-01	73.2%	53.3%
4019969	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.59	43.0	2.98e-01	78.0%	58.3%
5000899	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.59	51.0	3.71e-01	96.3%	53.9%
3588782	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.58	47.0	3.57e-01	91.5%	52.2%
4980175	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.55	49.0	4.09e-01	98.8%	95.7%
3985434	622.4.1.0 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related	0.53	38.0	3.72e-01	91.5%	67.8%
3763555	109.4.1.1505 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_FBXO47	0.53	46.0	3.42e-01	95.1%	39.5%
3215342	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.53	38.0	3.68e-01	91.5%	66.3%
3788919	2004.1.1.505 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30	0.52	44.0	2.90e-01	93.9%	49.4%
2337262	1189.1.1.1 ↗	alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop	0.51	42.0	3.99e-01	89.0%	93.8%
4393704	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	42.0	2.70e-01	97.6%	24.7%