←Back to structures

NC_061421.1__YP_010298720.1__MOC16_gp330__00083

Bact-Vir

NC_061421.1__YP_010298720.1__MOC16_gp330__00083

Identity

Accession:
NC_061421 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Maaswegvirus› Klebsiella_phage_vB_KpM_FBKp24

TaxID: 2801834

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-232
PDB
Domain cluster: rep: OR493421.1__WNY40985.1__X__00101__D54-206
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25677.3 best Chimallin_Phikzvirus 73.4 2.00e-20 100.0% 24.8%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nroA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.60 45.0 3.95e-01 78.3% 98.3%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 28.0 3.30e-01 84.7% 61.3%
4l4qA02 3.30.300.340 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › S-adenosylmethionine synthetase, N-terminal domain 0.58 41.0 4.51e-01 72.6% 96.9%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 33.0 3.60e-01 89.8% 67.2%
3okzB00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.55 46.0 3.68e-01 87.9% 90.5%
2h2yA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 38.0 4.33e-01 100.0% 99.1%
3pe5A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.53 43.0 3.61e-01 87.9% 98.6%
6fufB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 47.0 4.54e-01 100.0% 91.7%
3o0dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 3.51e-01 89.8% 90.0%
2xxpA02 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.51 44.0 3.69e-01 92.4% 99.6%
3irbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 22.0 3.02e-01 89.8% 82.4%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.51 44.0 3.52e-01 93.6% 78.6%
3ngqA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 45.0 3.56e-01 98.7% 90.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038844 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.72 36.0 5.01e-01 91.7% 96.2%
4416182 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.71 45.0 5.39e-01 100.0% 95.2%
3596304 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 35.0 4.71e-01 96.2% 100.0%
4927977 3662.1.1.0 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.63 28.0 3.32e-01 79.6% 60.0%
3499841 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 31.0 4.03e-01 93.0% 83.3%
3178803 896.1.1.3 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.61 26.0 3.43e-01 81.5% 70.6%
3944555 2008.1.1.103 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Transposase_31 0.59 43.0 4.40e-01 83.4% 76.7%
4025375 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.59 42.0 4.83e-01 92.4% 100.0%
3481564 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 31.0 4.09e-01 92.4% 100.0%
3206632 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.57 27.0 3.52e-01 84.1% 80.0%
4986581 283.1.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.57 27.0 3.44e-01 80.9% 75.6%
3742106 7579.1.1.92 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 0.53 48.0 3.57e-01 99.4% 93.5%
3935928 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.53 45.0 3.68e-01 91.1% 93.8%
3701914 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 30.0 3.70e-01 90.4% 90.5%
3242747 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.52 43.0 3.42e-01 87.9% 79.1%
3241489 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.52 42.0 3.41e-01 86.6% 80.7%
3217074 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.52 44.0 3.62e-01 91.7% 91.2%
3398380 246.3.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.51 45.0 3.32e-01 100.0% 63.5%
3857454 246.3.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.51 45.0 3.24e-01 100.0% 66.5%
3933733 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.50 41.0 3.52e-01 88.5% 94.7%
3873014 246.3.1.4 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.50 45.0 3.49e-01 100.0% 78.9%
D2 medium residues 249-285_298-312_351-378_587-599
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25677.3 best Chimallin_Phikzvirus 28.7 6.50e-07 58.1% 9.4%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 48.0 4.24e-01 81.7% 82.7%
1tiqB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 46.0 3.80e-01 80.6% 67.3%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 45.0 3.96e-01 81.7% 70.7%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 35.0 3.10e-01 100.0% 40.4%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 34.0 3.22e-01 92.5% 50.0%
1k0rA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.55 30.0 2.96e-01 80.6% 47.5%
7tm7B01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 37.0 2.46e-01 72.0% 43.6%
2oodA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.51 35.0 3.05e-01 98.9% 45.7%
3nsjA02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 41.0 3.68e-01 86.0% 72.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941968 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 46.0 3.92e-01 79.6% 74.0%
3192572 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.61 38.0 4.52e-01 98.9% 98.3%
5019648 298.2.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like 0.56 42.0 3.64e-01 86.0% 52.1%
3383626 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 43.0 3.84e-01 82.8% 72.7%
5047099 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 42.0 3.33e-01 83.9% 65.5%
3983402 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.52 31.0 3.61e-01 86.0% 83.1%
5018285 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.52 36.0 3.40e-01 73.1% 60.0%
3796820 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 37.0 3.89e-01 76.3% 94.1%
3268851 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 39.0 2.89e-01 80.6% 75.5%
4650778 2008.1.1.20 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.50 38.0 3.09e-01 79.6% 67.8%
D3 medium residues 331-350_379-586
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25677.3 best Chimallin_Phikzvirus 180.3 8.70e-53 93.4% 33.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4972140 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 24.0 2.96e-01 93.4% 58.0%