←Back to structures

NC_061421.1__YP_010298754.1__MOC16_gp296__00117

Bact-Vir

NC_061421.1__YP_010298754.1__MOC16_gp296__00117

Identity

Accession:
NC_061421 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Maaswegvirus› Klebsiella_phage_vB_KpM_FBKp24

TaxID: 2801834

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-95
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25614.2 best PhiKZ_VTX 52.7 5.70e-14 100.0% 30.4%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.63 45.0 3.81e-01 75.8% 79.5%
3sooA01 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.61 22.0 2.53e-01 80.2% 39.1%
3c18A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 41.0 3.82e-01 78.0% 90.4%
3vl9B00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.55 40.0 3.07e-01 78.0% 72.4%
3ilvA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.53 40.0 2.97e-01 82.4% 55.3%
4gu4A01 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.52 23.0 3.04e-01 97.8% 76.7%
5d8nA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.52 36.0 2.88e-01 72.5% 67.6%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 36.0 3.01e-01 75.8% 88.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3489007 2484.1.1.15 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.59 38.0 2.68e-01 70.3% 20.1%
4929446 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 41.0 3.48e-01 79.1% 69.7%
3926339 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 38.0 2.98e-01 72.5% 64.4%
4999529 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 37.0 2.76e-01 75.8% 40.8%
5081019 7514.1.1.11 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › RMMBL 0.51 36.0 3.37e-01 76.9% 85.6%
182769 2004.1.2.3 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › Hpr_kinase_C 0.50 36.0 3.01e-01 75.8% 88.5%
3552343 2484.1.1.15 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.50 34.0 2.43e-01 71.4% 80.0%
D2 high residues 116-311
PDB
Domain cluster: rep: term6_stool_scaffold_5_prodigal-single.1__X__X__00135__D127-319
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25614.2 best PhiKZ_VTX 220.9 3.30e-65 95.9% 60.7%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.66 29.0 4.39e-01 77.6% 100.0%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.65 32.0 4.44e-01 94.9% 97.8%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 30.0 3.81e-01 93.9% 73.5%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.63 35.0 4.60e-01 93.4% 100.0%
1y8aA02 1.10.3870.10 Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily 0.57 27.0 3.44e-01 81.6% 73.3%
1jfaB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 47.0 3.84e-01 89.8% 84.9%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.51 31.0 3.62e-01 100.0% 83.0%
1txgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 34.0 3.77e-01 83.2% 85.2%
7e4gA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 36.0 3.62e-01 84.2% 72.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4115682 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.63 36.0 4.68e-01 91.8% 100.0%
5034469 141.1.1.3 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.52 44.0 3.70e-01 89.8% 96.4%
5033911 141.1.1.3 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.52 41.0 3.58e-01 83.7% 97.7%
3824693 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 36.0 3.35e-01 83.2% 55.9%
3515 129.1.1.9 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_Gly3P_dh_C 0.51 34.0 3.77e-01 83.2% 85.2%
53245 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.51 34.0 3.74e-01 83.2% 84.5%
5060885 141.1.1.0 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases 0.50 42.0 3.70e-01 89.8% 100.0%