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NC_061441.1__YP_010299939.1__MPK64_gp178__00178

Bact-Vir

NC_061441.1__YP_010299939.1__MPK64_gp178__00178

Identity

Accession:
NC_061441 ↗
Kingdom:
phage

Quality

70.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-101
PDB
D2 high residues 152-261
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.64 49.0 4.33e-01 82.7% 79.4%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 45.0 3.68e-01 72.7% 95.5%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 32.0 4.35e-01 86.4% 96.4%
3e1eC00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 46.0 4.27e-01 83.6% 96.5%
3gkeA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.57 48.0 3.94e-01 92.7% 70.0%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 46.0 4.14e-01 88.2% 95.4%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.56 42.0 3.39e-01 77.3% 98.0%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.56 46.0 3.42e-01 86.4% 78.0%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 4.05e-01 86.4% 83.8%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.54 41.0 3.39e-01 81.8% 94.3%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 3.27e-01 90.0% 40.5%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.52 41.0 3.70e-01 86.4% 71.4%
2qxlB05 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.52 39.0 3.74e-01 80.0% 92.1%
3qh4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 3.27e-01 98.2% 92.4%
4iedA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 44.0 3.44e-01 95.5% 78.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3484671 3433.1.1.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.63 29.0 4.14e-01 79.1% 96.0%
4436313 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 46.0 4.97e-01 86.4% 95.6%
3968646 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.62 44.0 4.15e-01 72.7% 74.6%
1944087 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.62 47.0 4.67e-01 96.4% 75.9%
3813591 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 43.0 3.97e-01 72.7% 87.9%
5038844 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.60 38.0 4.41e-01 77.3% 88.7%
3792470 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.60 54.0 5.18e-01 100.0% 95.2%
3917054 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.60 53.0 5.13e-01 98.2% 94.4%
3533688 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 32.0 3.83e-01 75.5% 80.0%
2076954 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.57 43.0 3.79e-01 79.1% 85.3%
2028017 881.6.1.1 a+b three layers › Mog1p/PsbP-like › FrpD › FrpD › FrpC 0.56 45.0 3.59e-01 88.2% 42.4%
3616389 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 34.0 3.87e-01 76.4% 82.5%
3212698 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 46.0 4.00e-01 92.7% 74.4%
4943626 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.55 42.0 4.12e-01 95.5% 74.2%
177347 7579.1.1.45 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_7 0.55 46.0 3.20e-01 91.8% 70.1%
5063650 3518.1.1.1 a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.55 45.0 3.96e-01 89.1% 65.9%
3400513 77.1.1.4 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Chitin_bind_4 0.54 37.0 4.29e-01 79.1% 100.0%
1401858 71.1.1.6 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.53 41.0 3.40e-01 82.7% 94.3%
2319363 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.53 40.0 3.49e-01 78.2% 81.5%
3420926 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 41.0 2.97e-01 86.4% 55.3%
4982498 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 43.0 2.68e-01 90.0% 20.0%
3722114 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.51 40.0 3.58e-01 83.6% 95.5%
3737927 220.1.1.294 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 0.51 35.0 3.55e-01 84.5% 70.9%
D3 high residues 288-391
PDB
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.68 48.0 3.55e-01 72.1% 85.7%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.66 50.0 4.54e-01 81.7% 88.8%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 47.0 3.47e-01 79.8% 90.3%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 43.0 3.14e-01 72.1% 84.3%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 45.0 4.30e-01 77.9% 83.2%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 44.0 3.34e-01 77.9% 39.0%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.57 40.0 4.14e-01 71.2% 95.8%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 36.0 3.49e-01 100.0% 55.8%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.56 47.0 4.16e-01 93.3% 95.5%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 4.00e-01 84.6% 82.9%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 43.0 4.24e-01 83.7% 84.2%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.55 42.0 3.79e-01 81.7% 69.3%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 41.0 2.94e-01 79.8% 83.5%
2ovsA00 2.40.128.380 Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR 0.54 48.0 4.66e-01 100.0% 89.0%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.20e-01 81.7% 65.8%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 47.0 4.33e-01 100.0% 94.8%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 42.0 2.92e-01 86.5% 40.7%
3azwA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.62e-01 100.0% 60.9%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.52 38.0 4.10e-01 91.3% 96.4%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 45.0 3.13e-01 98.1% 80.5%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.88e-01 91.3% 35.0%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 4.22e-01 100.0% 97.7%
3w7tA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.51 45.0 3.48e-01 97.1% 83.6%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.51 31.0 3.53e-01 72.1% 92.4%
3shpA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 41.0 3.52e-01 87.5% 81.4%
1yprA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 39.0 3.77e-01 86.5% 75.2%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5067782 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.71 41.0 4.94e-01 100.0% 85.7%
3605770 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.70 54.0 4.17e-01 82.7% 57.5%
4031638 7089.1.1.1 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF1108 0.66 43.0 4.69e-01 82.7% 80.0%
3821429 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.66 50.0 4.41e-01 82.7% 85.6%
4646778 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.62 51.0 3.80e-01 88.5% 93.6%
3196366 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.61 43.0 3.57e-01 72.1% 87.0%
3739965 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.60 43.0 2.96e-01 74.0% 84.5%
3586827 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.60 36.0 3.50e-01 71.2% 53.0%
4956163 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.60 44.0 3.67e-01 79.8% 43.9%
5048170 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.60 39.0 4.40e-01 100.0% 87.5%
4995145 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.59 40.0 4.33e-01 100.0% 84.7%
5014023 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.59 41.0 3.43e-01 73.1% 63.0%
5037122 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.58 52.0 4.25e-01 100.0% 88.7%
3987919 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.58 35.0 3.51e-01 72.1% 57.3%
5047641 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.58 43.0 3.24e-01 76.9% 93.1%
5791 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.57 36.0 3.50e-01 100.0% 56.3%
5039218 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.56 39.0 3.64e-01 71.2% 74.6%
3707133 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.55 49.0 3.92e-01 100.0% 90.0%
None 0.55 48.0 3.09e-01 100.0% 33.5%
3874376 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.55 38.0 3.02e-01 72.1% 55.3%
2717534 12.3.1.31 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YgjK_N 0.54 42.0 3.10e-01 82.7% 86.8%
3241852 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 43.0 4.16e-01 83.7% 100.0%
3739528 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.53 46.0 3.73e-01 98.1% 68.3%
3647550 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.53 40.0 4.39e-01 97.1% 100.0%
3593313 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 36.0 2.96e-01 70.2% 70.0%
2756455 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.52 38.0 4.07e-01 94.2% 92.1%
5053431 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.52 39.0 3.45e-01 100.0% 53.5%
185604 3400.1.1.1 a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 0.51 38.0 2.98e-01 76.9% 77.5%
5076987 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.51 37.0 2.70e-01 77.9% 36.5%
4023075 5.1.4.383 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VPS11_N 0.51 42.0 3.09e-01 94.2% 55.6%
None 0.51 43.0 3.17e-01 100.0% 91.6%
3952469 3794.1.1.2 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.50 42.0 3.92e-01 100.0% 73.8%