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NC_061442.1__YP_010300126.1__MPK65_gp021__00021

Bact-Vir

NC_061442.1__YP_010300126.1__MPK65_gp021__00021

Identity

Accession:
NC_061442 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alexandravirus› Erwinia_phage_pEa_SNUABM_35

TaxID: 2869557

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-82
PDB
Domain cluster: rep: 04302015_21_scaffold_6_prodigal-single.1__X__X__00262__D12-68
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.75 63.0 6.24e-01 87.8% 92.1%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.05e-01 82.4% 71.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 5.06e-01 79.7% 80.3%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 5.06e-01 79.7% 84.1%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 4.54e-01 78.4% 60.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 5.03e-01 79.7% 90.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.65e-01 79.7% 84.1%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.63 44.0 3.12e-01 75.7% 30.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.82e-01 93.2% 83.3%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 43.0 4.05e-01 73.0% 95.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.50e-01 79.7% 84.7%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.60 47.0 4.65e-01 86.5% 91.1%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 42.0 2.83e-01 73.0% 33.5%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.59 49.0 3.83e-01 91.9% 71.8%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 44.0 4.38e-01 79.7% 100.0%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 3.81e-01 75.7% 100.0%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.59 49.0 3.82e-01 94.6% 71.2%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 50.0 4.49e-01 97.3% 67.3%
5dvyA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.57 39.0 3.34e-01 71.6% 77.8%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.57 47.0 3.66e-01 91.9% 70.5%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.36e-01 70.3% 94.8%
4hj1B03 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 4.03e-01 83.8% 92.2%
1g19A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 37.0 2.75e-01 70.3% 83.0%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 37.0 3.12e-01 70.3% 78.9%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 3.88e-01 86.5% 98.0%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 39.0 3.44e-01 78.4% 75.4%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 35.0 3.06e-01 70.3% 79.8%
5ysnB02 3.40.50.11240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ethanolamine ammonia-lyase light chain (EutC) 0.51 37.0 2.83e-01 77.0% 60.0%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 30.0 2.67e-01 90.5% 36.0%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3687023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 58.0 5.17e-01 79.7% 82.0%
3174822 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.71 55.0 5.41e-01 82.4% 92.5%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 48.0 5.06e-01 79.7% 80.3%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 48.0 5.10e-01 87.8% 84.6%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 48.0 5.08e-01 87.8% 84.6%
3597786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 4.85e-01 83.8% 95.8%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 47.0 4.97e-01 87.8% 84.6%
3589630 243.4.1.4 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DUF1292 0.67 48.0 4.49e-01 74.3% 70.0%
3799750 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.67 47.0 3.38e-01 73.0% 40.0%
3579141 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.66 47.0 3.03e-01 73.0% 25.8%
3587998 243.1.1.102 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF28180 0.66 45.0 3.98e-01 70.3% 88.6%
3580428 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 5.04e-01 73.0% 91.7%
3223708 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 45.0 3.81e-01 70.3% 90.0%
3255739 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.66 45.0 4.61e-01 70.3% 90.0%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 46.0 4.80e-01 83.8% 84.6%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 45.0 4.71e-01 79.7% 81.5%
3700454 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.83e-01 94.6% 94.8%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 44.0 4.64e-01 79.7% 81.5%
3202278 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.64 47.0 3.59e-01 78.4% 51.2%
5030457 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.63 46.0 4.06e-01 77.0% 87.3%
3624657 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.63 46.0 4.01e-01 77.0% 74.5%
3933099 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.62 45.0 4.29e-01 75.7% 81.2%
3558388 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.62 43.0 4.54e-01 71.6% 93.8%
3738722 883.1.1.7 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › MMM1 0.62 42.0 3.09e-01 70.3% 66.7%
4097328 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.62 52.0 4.41e-01 94.6% 97.6%
4259027 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.61 51.0 4.34e-01 91.9% 95.1%
4028378 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.61 53.0 4.40e-01 97.3% 63.1%
3177251 216.1.1.41 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › PF29959 0.60 50.0 3.97e-01 93.2% 69.0%
3249352 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 52.0 4.34e-01 97.3% 63.1%
3639466 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 53.0 4.27e-01 100.0% 59.3%
861 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.59 49.0 4.16e-01 94.6% 94.5%
3802808 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 51.0 4.10e-01 97.3% 68.3%
3876143 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 43.0 3.57e-01 79.7% 80.0%
3597361 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.58 50.0 4.22e-01 98.6% 63.1%
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.57 50.0 4.19e-01 98.6% 63.1%
2526900 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 47.0 2.82e-01 90.5% 82.6%
3966797 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.56 39.0 3.44e-01 74.3% 50.4%
3382308 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.56 39.0 2.62e-01 73.0% 75.7%
5047301 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 3.86e-01 79.7% 64.4%
4585632 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.55e-01 77.0% 92.0%
3587662 330.18.1.0 ↗ a+b two layers › dsRBD-like › Anti-CRISPR protein AcrIIA6 › Anti-CRISPR protein AcrIIA6 0.53 36.0 3.42e-01 70.3% 84.4%
3499311 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.69e-01 94.6% 86.5%
4595973 1.1.12.0 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins 0.53 45.0 3.89e-01 97.3% 99.2%
3973605 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 37.0 3.80e-01 74.3% 89.7%
5065609 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.52 41.0 3.66e-01 87.8% 93.6%
4962710 295.1.1.54 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF6360 0.52 35.0 3.43e-01 71.6% 71.8%
3688051 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.52 38.0 2.87e-01 79.7% 91.5%
3829694 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 45.0 3.00e-01 100.0% 81.9%
3472467 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.50 40.0 3.99e-01 87.8% 98.7%
3990341 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 36.0 3.31e-01 78.4% 81.9%