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NC_061443.1__YP_010300606.1__MPK66_gp165__00165

Bact-Vir

NC_061443.1__YP_010300606.1__MPK66_gp165__00165

Identity

Accession:
NC_061443 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alexandravirus› Erwinia_phage_pEa_SNUABM_2

TaxID: 2869547

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-116
PDB
Domain cluster: rep: NC_048077.1__YP_009813649.1__HOU32_gp204__00204__D133-212
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i6yA02 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.60 32.0 3.32e-01 100.0% 52.7%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.60 42.0 4.37e-01 82.5% 79.0%
3q2uA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.60 53.0 4.48e-01 99.1% 80.8%
1rc9A01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.59 52.0 4.52e-01 98.2% 82.2%
3s6sB00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.59 51.0 4.40e-01 93.9% 69.7%
6qmmA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 34.0 2.74e-01 83.3% 31.5%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 31.0 3.20e-01 71.1% 56.7%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.54 41.0 4.40e-01 82.5% 97.9%
2e7vA01 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.54 35.0 3.63e-01 71.9% 69.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964094 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.62 50.0 4.59e-01 87.7% 91.3%
3992937 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.61 52.0 4.62e-01 93.0% 95.2%
3932173 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.61 32.0 2.97e-01 100.0% 37.3%
3275694 872.3.1.6 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_3 0.59 46.0 4.84e-01 84.2% 94.0%
3513756 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.59 44.0 4.72e-01 80.7% 95.8%
3492008 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.57 47.0 4.39e-01 90.4% 89.0%
3540649 11.1.1.789 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA1549 0.56 38.0 3.75e-01 71.1% 64.2%
3706258 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.56 43.0 4.21e-01 82.5% 74.4%
3482574 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.56 42.0 4.27e-01 81.6% 80.7%
3498135 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.56 43.0 4.43e-01 84.2% 88.6%
4027296 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.56 42.0 4.39e-01 81.6% 87.6%
3492448 872.3.1.7 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.55 42.0 4.49e-01 82.5% 93.0%
4994093 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 34.0 3.03e-01 70.2% 41.2%
3496203 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.55 42.0 4.46e-01 82.5% 93.0%
3474774 246.3.1.4 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.55 40.0 2.94e-01 77.2% 76.8%
3402925 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.55 43.0 3.74e-01 84.2% 61.1%
3946272 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 42.0 3.76e-01 96.5% 59.4%
3709183 872.3.1.7 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.53 41.0 4.18e-01 82.5% 87.3%
3906458 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.53 40.0 3.75e-01 84.2% 62.7%
3270041 872.3.1.7 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.53 41.0 4.23e-01 82.5% 89.5%
2988313 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.52 42.0 3.25e-01 86.8% 88.6%
2800329 872.1.1.1 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N 0.52 40.0 4.27e-01 83.3% 96.9%
3480012 304.113.1.3 ↗ a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › JAG1 0.52 34.0 3.50e-01 76.3% 68.2%
3178421 2003.1.5.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.52 37.0 2.67e-01 76.3% 49.4%
3510623 872.3.1.7 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.52 45.0 4.37e-01 100.0% 86.8%
4999233 304.21.1.1 ↗ a+b two layers › Alpha-beta plaits › Formylmethanofuran:tetrahydromethanopterin formyltransferase › Formylmethanofuran:tetrahydromethanopterin formyltransferase › FTR 0.52 35.0 3.04e-01 73.7% 45.1%
3508633 872.1.1.0 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.51 39.0 4.15e-01 87.7% 97.9%