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NC_061447.1__YP_010301926.1__MPK70_gp144__00144

Bact-Vir

NC_061447.1__YP_010301926.1__MPK70_gp144__00144

Identity

Accession:
NC_061447 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-91
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20294.5 best KMPT-N 57.0 2.20e-15 70.6% 100.0%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 41.0 5.00e-01 70.6% 96.0%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.69 43.0 3.92e-01 82.4% 46.9%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 47.0 5.17e-01 81.2% 88.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 45.0 5.26e-01 78.8% 100.0%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 49.0 5.07e-01 75.3% 87.5%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 49.0 5.14e-01 75.3% 88.2%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 45.0 5.23e-01 78.8% 100.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.67 41.0 4.95e-01 75.3% 96.3%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 47.0 5.20e-01 77.6% 93.9%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.66 50.0 3.72e-01 80.0% 70.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 44.0 4.96e-01 77.6% 92.2%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 41.0 4.87e-01 78.8% 94.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 46.0 5.13e-01 76.5% 95.5%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 4.87e-01 82.4% 86.5%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.40e-01 74.1% 71.6%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.64 47.0 4.52e-01 85.9% 68.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 45.0 4.07e-01 78.8% 52.9%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 43.0 4.31e-01 76.5% 68.6%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 45.0 4.78e-01 78.8% 85.3%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 37.0 4.37e-01 70.6% 92.3%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 38.0 4.27e-01 71.8% 81.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 38.0 4.18e-01 77.6% 78.1%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 47.0 4.09e-01 81.2% 87.8%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 43.0 4.59e-01 77.6% 90.3%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 44.0 4.52e-01 80.0% 83.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 37.0 3.96e-01 77.6% 74.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.59 40.0 3.95e-01 76.5% 64.2%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 43.0 2.83e-01 77.6% 91.9%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 38.0 3.91e-01 74.1% 87.8%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 47.0 4.13e-01 100.0% 82.4%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511277 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.16e-01 74.1% 75.0%
5083883 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.72 39.0 5.15e-01 76.5% 100.0%
4946165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 41.0 4.84e-01 76.5% 89.1%
5060760 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 41.0 4.60e-01 77.6% 76.9%
3523918 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.69 45.0 5.04e-01 77.6% 87.7%
3224441 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 45.0 4.91e-01 75.3% 83.8%
3998645 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 45.0 5.04e-01 77.6% 89.2%
3523046 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 47.0 4.73e-01 80.0% 71.8%
3541996 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.68 49.0 3.76e-01 83.5% 33.7%
4995678 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 43.0 5.12e-01 81.2% 100.0%
4963446 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 42.0 4.68e-01 76.5% 81.5%
4669027 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 50.0 3.61e-01 78.8% 73.3%
4367301 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 42.0 5.01e-01 78.8% 98.2%
4474739 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 49.0 5.17e-01 85.9% 88.0%
4967397 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 40.0 4.44e-01 76.5% 76.9%
3233461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 45.0 5.18e-01 75.3% 100.0%
3903323 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 45.0 4.74e-01 77.6% 78.7%
4011604 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 44.0 4.60e-01 78.8% 76.0%
3398093 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.66 41.0 4.62e-01 75.3% 86.7%
3765274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.62e-01 85.9% 70.0%
3671986 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.66 39.0 4.26e-01 74.1% 71.4%
5057234 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.86e-01 83.5% 85.7%
3547106 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 46.0 4.59e-01 85.9% 70.0%
3222210 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 45.0 4.84e-01 77.6% 85.7%
4952887 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 40.0 4.66e-01 76.5% 92.7%
4550532 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.65 47.0 4.61e-01 75.3% 72.2%
4990212 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 40.0 4.65e-01 81.2% 94.5%
158943 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 45.0 4.70e-01 78.8% 78.5%
3541241 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.65 41.0 4.68e-01 74.1% 90.0%
5046498 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.65 49.0 3.91e-01 80.0% 93.3%
5017214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 39.0 4.55e-01 76.5% 92.7%
2725406 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 52.0 5.34e-01 91.8% 93.9%
3853422 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 51.0 4.81e-01 87.1% 74.3%
4992872 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 38.0 4.38e-01 76.5% 90.9%
5025079 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 38.0 4.43e-01 77.6% 92.7%
3230400 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 45.0 5.05e-01 76.5% 100.0%
3840679 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 43.0 4.18e-01 87.1% 64.2%
3883159 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 41.0 4.09e-01 83.5% 64.4%
3594572 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.04e-01 85.9% 47.7%
3479037 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.98e-01 85.9% 90.0%
3482646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 48.0 3.68e-01 85.9% 36.0%
3570399 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 40.0 4.40e-01 76.5% 86.2%
3920666 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 42.0 4.21e-01 85.9% 67.8%
3617111 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 42.0 4.16e-01 84.7% 66.7%
4405252 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.61 46.0 3.90e-01 80.0% 80.7%
3406712 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.97e-01 85.9% 91.3%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.61 37.0 3.96e-01 71.8% 71.4%
3709058 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 3.97e-01 85.9% 49.0%
3765289 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 40.0 3.99e-01 85.9% 64.4%
3808601 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.58e-01 80.0% 94.1%
5067227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.28e-01 77.6% 74.7%
3795121 4.1.1.110 beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.60 37.0 4.12e-01 76.5% 80.0%
5074039 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.28e-01 75.3% 80.0%
3845425 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 41.0 4.12e-01 88.2% 70.0%
4946028 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.94e-01 75.3% 66.7%
3576128 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.54e-01 96.5% 91.3%
3941004 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 39.0 4.03e-01 77.6% 73.8%
3220929 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 39.0 4.09e-01 77.6% 78.7%
3923813 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 39.0 4.32e-01 71.8% 90.8%
4932696 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.57 41.0 3.96e-01 82.4% 66.0%
3668713 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.54 48.0 3.56e-01 98.8% 75.0%
3797511 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 41.0 3.98e-01 87.1% 73.7%
4962256 101.1.2.937 alpha arrays › HTH › HTH › winged helix domain › PF25943 0.54 38.0 3.50e-01 74.1% 75.5%
3241890 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.91e-01 83.5% 74.0%
D2 high residues 133-295
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.61 43.0 3.64e-01 71.2% 44.4%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 3.73e-01 72.4% 89.1%
3suuA02 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.52 36.0 3.79e-01 70.6% 77.9%
1k9fA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.51 35.0 3.91e-01 71.2% 90.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3731317 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.63 42.0 3.69e-01 71.8% 45.8%
3971095 4334.1.1.0 beta complex topology › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins 0.60 27.0 3.81e-01 77.3% 86.3%
3987761 2498.1.1.1 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 0.58 40.0 4.19e-01 71.2% 90.3%
4955694 2498.2.1.0 mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain 0.53 37.0 4.13e-01 71.2% 98.4%
182769 2004.1.2.3 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › Hpr_kinase_C 0.52 37.0 3.73e-01 72.4% 89.1%
3252321 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 39.0 4.01e-01 77.9% 88.4%
3999417 2498.1.1.2 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Astacin 0.52 36.0 3.32e-01 71.2% 61.4%
3575257 2498.1.1.74 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Metallopep 0.50 35.0 3.05e-01 71.2% 71.0%
5065122 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.50 36.0 3.39e-01 71.8% 83.1%
D3 high residues 299-374
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1whuA00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.60 34.0 3.09e-01 82.9% 40.4%
4ivfA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 41.0 3.58e-01 78.9% 76.7%
5f7vA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 43.0 2.83e-01 97.4% 65.7%
2ktyA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 44.0 3.22e-01 98.7% 39.8%
3cbuA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 37.0 3.10e-01 77.6% 64.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4456842 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.55 32.0 3.53e-01 88.2% 73.3%
4584156 2005.1.1.31 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CDPS 0.53 43.0 3.21e-01 94.7% 39.1%
4944622 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 36.0 3.46e-01 77.6% 60.0%
3969456 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.50 41.0 3.19e-01 100.0% 87.1%