←Back to structures

NC_061449.1__YP_010302461.1__MPK72_gp002__00002

Bact-Vir

NC_061449.1__YP_010302461.1__MPK72_gp002__00002

Identity

Accession:
NC_061449 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alexandravirus› Erwinia_phage_pEa_SNUABM_17

TaxID: 2869545

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-76
PDB
Domain cluster: rep: MK580972.1__QBP06339.1__X__00143__D36-100
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.77 59.0 5.33e-01 81.4% 82.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 55.0 5.94e-01 75.7% 93.3%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 56.0 5.59e-01 78.6% 97.3%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 56.0 5.82e-01 78.6% 92.4%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 55.0 5.65e-01 77.1% 92.4%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 5.39e-01 78.6% 96.2%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 55.0 5.93e-01 78.6% 100.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.74 52.0 5.59e-01 74.3% 100.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 64.0 6.01e-01 97.1% 94.2%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.03e-01 85.7% 68.6%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.66 51.0 4.27e-01 85.7% 47.6%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.75e-01 84.3% 92.9%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.59 44.0 3.28e-01 84.3% 50.2%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 45.0 3.76e-01 87.1% 49.6%
2vpzA05 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 48.0 3.80e-01 98.6% 84.3%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 40.0 3.72e-01 88.6% 59.1%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 44.0 3.98e-01 85.7% 97.9%
1vwxB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 47.0 3.60e-01 98.6% 79.4%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 43.0 3.90e-01 84.3% 96.9%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 43.0 3.67e-01 84.3% 82.1%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.55 43.0 4.03e-01 87.1% 91.1%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 38.0 3.42e-01 88.6% 51.0%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 36.0 3.35e-01 70.0% 53.3%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 36.0 3.80e-01 71.4% 96.9%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 37.0 3.87e-01 72.9% 100.0%
5ccbA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 36.0 3.64e-01 72.9% 88.9%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 45.0 3.75e-01 100.0% 66.7%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 40.0 3.61e-01 85.7% 85.1%
3pm9A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 41.0 3.51e-01 90.0% 84.4%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 43.0 3.19e-01 97.1% 96.0%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 3.59e-01 100.0% 61.2%
2qhlD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.43e-01 85.7% 82.6%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 58.0 6.01e-01 75.7% 86.2%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.78 58.0 5.89e-01 80.0% 87.1%
4662294 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 54.0 5.92e-01 72.9% 100.0%
4347922 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 54.0 5.80e-01 74.3% 100.0%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 57.0 5.60e-01 80.0% 85.3%
4451993 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 59.0 6.29e-01 82.9% 100.0%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.75 56.0 5.34e-01 78.6% 77.5%
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 58.0 6.24e-01 82.9% 100.0%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.75 55.0 5.78e-01 77.1% 98.4%
139950 4.1.1.126 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5608 0.75 53.0 5.81e-01 74.3% 100.0%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 55.0 5.74e-01 78.6% 98.5%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 53.0 5.82e-01 74.3% 100.0%
4149821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.92e-01 80.0% 100.0%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.62e-01 80.0% 84.3%
4985969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 52.0 5.55e-01 74.3% 98.3%
5034040 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 51.0 5.60e-01 72.9% 100.0%
4287411 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.74 60.0 5.75e-01 88.6% 88.7%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 5.94e-01 98.6% 84.2%
4974211 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.73 53.0 5.66e-01 77.1% 100.0%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 55.0 5.72e-01 80.0% 98.4%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.72 51.0 5.43e-01 78.6% 86.7%
4084850 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 56.0 5.78e-01 84.3% 98.5%
5064457 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.72 49.0 4.98e-01 71.4% 71.4%
4212091 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 55.0 5.72e-01 82.9% 100.0%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 58.0 5.71e-01 87.1% 90.4%
3590784 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.72 54.0 5.55e-01 80.0% 86.2%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.58e-01 78.6% 100.0%
4088209 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 57.0 5.88e-01 85.7% 100.0%
4429329 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 56.0 5.75e-01 84.3% 98.5%
4216845 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 57.0 5.68e-01 87.1% 91.8%
4286562 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 57.0 5.90e-01 87.1% 100.0%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 58.0 6.04e-01 88.6% 100.0%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 54.0 5.62e-01 82.9% 98.5%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 56.0 5.63e-01 85.7% 95.7%
3730011 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.70 60.0 4.88e-01 98.6% 71.4%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 59.0 5.82e-01 92.9% 92.0%
4299932 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 54.0 5.56e-01 84.3% 100.0%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 55.0 5.56e-01 87.1% 97.1%
4124780 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 57.0 5.70e-01 91.4% 94.5%
5057445 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.69 51.0 4.78e-01 78.6% 64.7%
4205717 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 57.0 5.51e-01 91.4% 86.3%
4957350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.25e-01 80.0% 93.8%
4332042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.48e-01 87.1% 91.4%
4261362 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 58.0 5.84e-01 92.9% 97.1%
3948255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 4.27e-01 82.9% 68.5%
4396355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 56.0 5.31e-01 91.4% 90.6%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 57.0 5.78e-01 92.9% 98.6%
3578824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 54.0 4.99e-01 100.0% 68.9%
4990290 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.66 47.0 4.62e-01 74.3% 70.7%
3222051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 48.0 5.00e-01 80.0% 90.8%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.98e-01 82.9% 94.3%
3223271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 4.71e-01 100.0% 69.4%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.44e-01 92.9% 95.7%
4640515 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.64 42.0 4.77e-01 74.3% 96.0%
4954284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.89e-01 77.1% 91.7%
4280256 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.63 43.0 4.80e-01 75.7% 98.0%
4069793 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 55.0 5.53e-01 97.1% 97.1%
4031578 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.71e-01 72.9% 98.0%
4029082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.82e-01 80.0% 100.0%
4937158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 5.12e-01 87.1% 100.0%
3181766 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.62 47.0 4.69e-01 85.7% 81.3%
4550511 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.61 39.0 4.38e-01 70.0% 100.0%
4046385 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.61 52.0 4.19e-01 97.1% 53.6%
5042544 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 43.0 4.43e-01 75.7% 87.7%
3936802 10.1.1.90 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29322 0.59 47.0 3.70e-01 87.1% 69.3%
4963446 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.32e-01 78.6% 93.8%
5042797 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.57 41.0 4.38e-01 80.0% 100.0%
5040153 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 3.98e-01 78.6% 100.0%
3351103 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.52 40.0 3.33e-01 85.7% 91.1%
3239722 390.1.1.7 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.52 39.0 3.54e-01 82.9% 69.0%
3208224 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 39.0 3.01e-01 85.7% 67.6%