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NC_061449.1__YP_010302521.1__MPK72_gp062__00062

Bact-Vir

NC_061449.1__YP_010302521.1__MPK72_gp062__00062

Identity

Accession:
NC_061449 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alexandravirus› Erwinia_phage_pEa_SNUABM_17

TaxID: 2869545

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-101
PDB
Domain cluster: rep: NC_028988.1__YP_009216561.1__AVU67_gp23__00023__D18-98
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.81 47.0 5.03e-01 73.2% 65.5%
2or0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.74 50.0 4.01e-01 70.1% 45.2%
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.73 46.0 5.34e-01 77.3% 87.1%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.65 45.0 3.78e-01 73.2% 45.0%
6v9zA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.63 56.0 3.83e-01 96.9% 81.8%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 46.0 3.49e-01 79.4% 68.0%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 55.0 5.03e-01 100.0% 82.9%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.59 44.0 3.96e-01 78.4% 68.9%
8h6qD01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.56 50.0 3.52e-01 99.0% 38.4%
3unoE00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 51.0 4.19e-01 99.0% 91.6%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 49.0 4.46e-01 100.0% 75.4%
6bl6B01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.53 45.0 3.20e-01 95.9% 82.3%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 46.0 4.09e-01 100.0% 67.1%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.52 48.0 4.66e-01 100.0% 96.2%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 47.0 4.18e-01 100.0% 93.5%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 48.0 4.74e-01 100.0% 96.1%
3nkzA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.50 43.0 4.31e-01 100.0% 94.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3481594 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.72 53.0 4.15e-01 77.3% 88.2%
3832267 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.72 50.0 4.94e-01 71.1% 90.0%
3489903 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.71 54.0 4.88e-01 78.4% 81.6%
4996191 159.1.2.2 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG 0.68 55.0 5.27e-01 83.5% 76.1%
4023617 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.66 55.0 3.45e-01 88.7% 35.9%
3924651 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 47.0 4.74e-01 75.3% 84.2%
3792152 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.64 45.0 4.09e-01 73.2% 57.7%
865208 3560.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 0.64 46.0 3.80e-01 76.3% 54.6%
3366617 3560.1.1.5 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › PF28579 0.62 45.0 3.87e-01 77.3% 58.1%
3498536 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.60 42.0 4.02e-01 78.4% 62.7%
4002563 192.8.1.303 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Tmemb_cc2 0.58 54.0 4.32e-01 100.0% 90.6%
55837 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.55 50.0 4.16e-01 100.0% 94.5%
3596737 604.8.1.0 ↗ alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.53 49.0 4.45e-01 100.0% 83.1%
3221299 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.52 46.0 4.15e-01 100.0% 89.6%