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NC_061449.1__YP_010302624.1__MPK72_gp165__00165

Bact-Vir

NC_061449.1__YP_010302624.1__MPK72_gp165__00165

Identity

Accession:
NC_061449 ↗
Kingdom:
phage

Quality

70.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-103
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.62 37.0 4.49e-01 75.2% 95.3%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 35.0 3.69e-01 78.2% 67.8%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 31.0 3.26e-01 71.3% 60.0%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 30.0 3.39e-01 70.3% 71.1%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 2.80e-01 72.3% 68.0%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.54 39.0 3.78e-01 75.2% 73.0%
4c98A02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.50e-01 74.3% 67.9%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 30.0 3.03e-01 71.3% 52.5%
1go3E02 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.53 38.0 4.21e-01 75.2% 93.8%
3dktA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.52 45.0 3.89e-01 100.0% 99.4%
6i9gA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.52 45.0 3.87e-01 100.0% 97.6%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 33.0 3.31e-01 97.0% 63.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3991844 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 33.0 3.37e-01 71.3% 58.0%
4030627 872.3.1.7 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.54 42.0 4.34e-01 85.1% 97.9%
3581950 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.53 31.0 3.13e-01 71.3% 57.1%
3623510 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.52 32.0 3.17e-01 71.3% 57.1%
3350520 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 47.0 3.13e-01 100.0% 62.6%
3798057 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.51 33.0 3.22e-01 70.3% 59.1%
3723291 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.50 37.0 3.03e-01 77.2% 68.4%
5077058 304.51.1.1 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.50 36.0 3.38e-01 74.3% 72.8%
D2 medium residues 111-151
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.67 58.0 3.62e-01 100.0% 17.6%
3iu6A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 50.0 3.47e-01 100.0% 49.0%