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NC_061450.1__YP_010302881.1__MPK73_gp092__00092

Bact-Vir

NC_061450.1__YP_010302881.1__MPK73_gp092__00092

Identity

Accession:
NC_061450 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rivsvirus› Erwinia_phage_pEa_SNUABM_5

TaxID: 2797313

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-65
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ly5B01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.70 56.0 3.88e-01 92.7% 35.9%
3eo7A01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.68 55.0 3.49e-01 95.1% 28.1%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 3.87e-01 95.1% 53.5%
2kksA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 51.0 3.57e-01 100.0% 35.6%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 39.0 2.68e-01 70.7% 17.9%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.60 41.0 3.89e-01 70.7% 100.0%
1r3fA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.60 50.0 4.39e-01 100.0% 84.6%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 46.0 3.56e-01 100.0% 51.3%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.59 41.0 3.76e-01 75.6% 58.9%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.59 46.0 4.49e-01 87.8% 84.8%
2ltjA00 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.58 41.0 3.01e-01 75.6% 51.4%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 43.0 3.14e-01 85.4% 41.2%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 3.80e-01 78.0% 64.7%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 42.0 2.61e-01 82.9% 19.2%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 43.0 3.09e-01 100.0% 54.6%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 37.0 3.85e-01 75.6% 75.8%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 37.0 3.28e-01 75.6% 44.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 3.89e-01 97.6% 75.0%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 42.0 3.68e-01 97.6% 78.9%
4o2hA00 3.10.450.610 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 47.0 3.26e-01 100.0% 40.9%
1ja3A00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 40.0 3.14e-01 90.2% 53.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.54 41.0 2.85e-01 87.8% 30.5%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.54 44.0 2.63e-01 100.0% 26.5%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 40.0 3.72e-01 87.8% 89.5%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 36.0 2.75e-01 75.6% 57.1%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 41.0 3.59e-01 90.2% 67.2%
1rjtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.21e-01 78.0% 43.8%
4n4nB00 3.90.640.100 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.52 40.0 3.71e-01 87.8% 66.1%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 38.0 3.31e-01 100.0% 47.9%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.52 42.0 3.31e-01 97.6% 53.5%
5lznA00 3.10.20.360 Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain 0.52 41.0 3.00e-01 87.8% 76.6%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 2.91e-01 92.7% 53.0%
1qf8A02 2.20.25.20 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 34.0 2.98e-01 75.6% 40.3%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5019922 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 61.0 3.65e-01 97.6% 24.8%
4386529 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.72 59.0 3.62e-01 95.1% 27.2%
2842373 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.70 57.0 3.74e-01 95.1% 32.8%
5002753 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 58.0 4.60e-01 100.0% 91.8%
4087191 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.65 54.0 4.76e-01 100.0% 89.2%
None — 0.63 44.0 2.49e-01 75.6% 6.7%
3585652 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.10e-01 82.9% 66.7%
3253803 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 49.0 3.98e-01 100.0% 54.4%
3557162 5.1.5.52 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.60 49.0 2.77e-01 95.1% 14.7%
3179214 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.59 40.0 2.31e-01 78.0% 7.2%
3628131 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 49.0 3.85e-01 100.0% 47.0%
3702281 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.58 40.0 3.68e-01 75.6% 52.7%
4808044 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 41.0 4.07e-01 82.9% 73.9%
4012778 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.57 40.0 4.03e-01 75.6% 82.5%
3213181 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 38.0 3.64e-01 70.7% 62.0%
5048970 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.56 45.0 3.96e-01 100.0% 97.1%
3835809 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.56 38.0 3.87e-01 78.0% 75.0%
4031529 129.1.1.2 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.55 42.0 3.08e-01 87.8% 30.4%
4943539 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 3.90e-01 78.0% 79.1%
5030452 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 36.0 3.58e-01 75.6% 62.2%
3531764 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.55 43.0 3.65e-01 92.7% 65.3%
3630020 304.107.1.3 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › TrmE_N 0.54 41.0 3.10e-01 95.1% 36.8%
4025601 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.54 45.0 2.65e-01 100.0% 24.2%
3531973 376.1.3.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H 0.53 36.0 2.61e-01 70.7% 24.2%
3346241 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.53 37.0 3.50e-01 75.6% 58.0%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.53 40.0 3.21e-01 92.7% 59.0%
2773985 219.1.1.43 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase 0.53 42.0 2.72e-01 100.0% 16.9%
2793138 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.53 37.0 3.29e-01 78.0% 50.0%
3781087 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.53 41.0 2.45e-01 95.1% 42.5%
4012777 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.61e-01 78.0% 75.6%
5028776 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.43e-01 78.0% 60.0%
3171136 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.52 39.0 2.96e-01 85.4% 38.2%
5028865 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 39.0 3.69e-01 82.9% 92.0%
5061538 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 37.0 3.46e-01 78.0% 61.8%
3874787 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 33.0 3.39e-01 75.6% 67.5%
4945758 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 40.0 3.51e-01 92.7% 85.7%
4968829 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 38.0 2.46e-01 85.4% 19.7%
D2 high residues 74-191
PDB
Domain cluster: rep: IMGVR_UViG_3300015214_002962-3300015214-Ga0172382_100065621__D24-131