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NC_061450.1__YP_010302890.1__MPK73_gp101__00101
Bact-VirNC_061450.1__YP_010302890.1__MPK73_gp101__00101
Identity
- Accession:
- NC_061450 ↗
- Kingdom:
- phage
Quality
83.8
mean pLDDT
Taxonomy
TaxID: 2797313
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-54
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mdgA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.57 | 28.0 | 2.84e-01 | 73.6% | 41.8% |
| 6ks6G01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.56 | 42.0 | 2.81e-01 | 88.7% | 71.9% |
| 4bc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 46.0 | 2.93e-01 | 100.0% | 48.7% |
| 2w8xB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.54 | 35.0 | 3.31e-01 | 96.2% | 53.0% |
| 3kttB01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.52 | 39.0 | 2.67e-01 | 88.7% | 73.3% |
| 5x9vA01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.51 | 38.0 | 2.58e-01 | 88.7% | 75.9% |
| 4ntwB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.51 | 34.0 | 3.36e-01 | 94.3% | 64.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4355340 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.61 | 44.0 | 4.39e-01 | 77.4% | 78.2% |
| 4257421 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.59 | 45.0 | 3.25e-01 | 86.8% | 37.6% |
| 1870825 | 6.1.1.29 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CysR_MRC2_N | 0.59 | 41.0 | 3.27e-01 | 75.5% | 74.4% |
| 4981577 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.54 | 37.0 | 2.89e-01 | 73.6% | 50.4% |
| 3921366 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 35.0 | 3.17e-01 | 100.0% | 48.0% |
| 5034709 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.53 | 40.0 | 2.56e-01 | 84.9% | 47.2% |
| 5000750 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.53 | 41.0 | 2.74e-01 | 90.6% | 72.3% |
| 3579071 | 70.3.1.5 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR | 0.53 | 42.0 | 2.96e-01 | 100.0% | 84.1% |
| 3470832 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.52 | 33.0 | 3.55e-01 | 94.3% | 87.5% |
| 3472024 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.51 | 34.0 | 3.42e-01 | 98.1% | 69.1% |
D2
high
residues 68-150
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r3aA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 41.0 | 3.18e-01 | 100.0% | 30.1% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 38.0 | 2.77e-01 | 100.0% | 21.9% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 44.0 | 4.22e-01 | 97.6% | 63.3% |
| 4iw7A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 42.0 | 3.77e-01 | 92.8% | 52.2% |
| 7w6zA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.59 | 44.0 | 4.29e-01 | 81.9% | 97.9% |
| 1k32A04 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 40.0 | 3.84e-01 | 72.3% | 90.5% |
| 1y8tA03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.57 | 39.0 | 3.90e-01 | 71.1% | 90.9% |
| 1lm4A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.57 | 45.0 | 3.51e-01 | 88.0% | 76.8% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.56 | 48.0 | 3.86e-01 | 96.4% | 72.3% |
| 5inwA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.56 | 40.0 | 3.67e-01 | 90.4% | 57.4% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 36.0 | 3.13e-01 | 97.6% | 43.8% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 35.0 | 3.80e-01 | 91.6% | 81.8% |
| 2anrA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 39.0 | 4.14e-01 | 92.8% | 85.3% |
| 3v3kD00 | 1.20.1260.90 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.54 | 41.0 | 3.27e-01 | 80.7% | 54.9% |
| 1szzA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.54 | 43.0 | 3.53e-01 | 92.8% | 83.0% |
| 1f0cA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 38.0 | 3.42e-01 | 89.2% | 53.4% |
| 7byjA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 39.0 | 3.77e-01 | 79.5% | 75.8% |
| 4pk9A00 | 3.40.1090.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain | 0.52 | 44.0 | 3.02e-01 | 100.0% | 81.1% |
| 5hwoA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 44.0 | 2.91e-01 | 100.0% | 88.5% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 3.81e-01 | 91.6% | 80.9% |
| 1a31A03 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.51 | 42.0 | 3.62e-01 | 97.6% | 91.3% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.51 | 38.0 | 3.11e-01 | 79.5% | 54.0% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.51 | 40.0 | 3.51e-01 | 89.2% | 95.7% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 44.0 | 3.92e-01 | 98.8% | 85.8% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 44.0 | 3.79e-01 | 96.4% | 85.4% |
| 3tqeA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.51 | 32.0 | 3.39e-01 | 91.6% | 72.6% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.48e-01 | 79.5% | 82.4% |
| 1v57A03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 39.0 | 3.29e-01 | 84.3% | 64.6% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4023956 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.67 | 43.0 | 3.69e-01 | 100.0% | 42.3% |
| 3508714 | 295.1.1.29 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ | 0.64 | 53.0 | 4.38e-01 | 95.2% | 85.0% |
| 3942738 | 295.1.1.29 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ | 0.63 | 52.0 | 4.35e-01 | 94.0% | 85.8% |
| 4943420 | 3501.1.1.2 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › DUF2067 | 0.61 | 41.0 | 4.45e-01 | 97.6% | 82.9% |
| 3783976 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.60 | 49.0 | 4.85e-01 | 100.0% | 83.3% |
| 3964843 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.60 | 47.0 | 4.52e-01 | 85.5% | 97.9% |
| 4479893 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.57 | 49.0 | 4.55e-01 | 97.6% | 95.5% |
| None | — | 0.57 | 36.0 | 2.38e-01 | 97.6% | 14.1% | |
| 3582308 | 220.1.1.16 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF1681 | 0.56 | 42.0 | 4.10e-01 | 83.1% | 83.2% |
| 4112553 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.56 | 48.0 | 4.02e-01 | 96.4% | 89.7% |
| 4677683 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.56 | 41.0 | 3.04e-01 | 78.3% | 33.0% |
| 3839627 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.55 | 46.0 | 4.04e-01 | 96.4% | 94.1% |
| 5082761 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.55 | 47.0 | 4.14e-01 | 96.4% | 100.0% |
| 3589473 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.55 | 41.0 | 4.18e-01 | 80.7% | 88.7% |
| 4025072 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.55 | 44.0 | 4.02e-01 | 100.0% | 65.2% |
| 4024568 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.54 | 37.0 | 2.62e-01 | 71.1% | 36.7% |
| 5027344 | 1170.1.1.0 ↗ | beta barrels › IL8-related › IL8-related › IL8 | 0.54 | 35.0 | 4.07e-01 | 72.3% | 98.2% |
| 3239066 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.54 | 47.0 | 3.07e-01 | 100.0% | 78.6% |
| 3508428 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 49.0 | 3.78e-01 | 100.0% | 47.2% |
| 3891447 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.54 | 45.0 | 3.51e-01 | 97.6% | 79.0% |
| 3318771 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.53 | 39.0 | 3.86e-01 | 92.8% | 72.2% |
| 4322692 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.53 | 37.0 | 3.79e-01 | 97.6% | 75.0% |
| 4217144 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.53 | 37.0 | 3.79e-01 | 97.6% | 76.2% |
| 3698817 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.53 | 43.0 | 3.99e-01 | 91.6% | 85.5% |
| 3873803 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.52 | 39.0 | 3.87e-01 | 97.6% | 74.4% |
| 3247329 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 40.0 | 3.67e-01 | 81.9% | 95.5% |
| 3664617 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.52 | 34.0 | 3.39e-01 | 72.3% | 63.5% |
| 3593102 | 1016.1.1.0 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 | 0.52 | 43.0 | 3.77e-01 | 92.8% | 70.8% |
| 3739592 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.52 | 38.0 | 3.95e-01 | 91.6% | 85.3% |
| 3778928 | 5050.1.1.22 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1_like | 0.52 | 46.0 | 2.88e-01 | 100.0% | 37.7% |
| 3883105 | 3226.1.1.1 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease | 0.52 | 44.0 | 2.79e-01 | 98.8% | 60.2% |
| 3214986 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.52 | 38.0 | 3.93e-01 | 96.4% | 81.2% |
| 3933293 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 30.0 | 3.39e-01 | 74.7% | 79.3% |
| 3604108 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 3.29e-01 | 75.9% | 79.2% |
| 4494257 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.51 | 44.0 | 3.47e-01 | 96.4% | 84.4% |
| 4388283 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.51 | 35.0 | 3.81e-01 | 95.2% | 85.7% |
| 4929251 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.51 | 44.0 | 3.43e-01 | 96.4% | 87.9% |
| 4134039 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.51 | 35.0 | 3.67e-01 | 96.4% | 78.7% |
| 4453818 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.50 | 38.0 | 3.22e-01 | 83.1% | 51.3% |
| 3235523 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.50 | 38.0 | 2.64e-01 | 98.8% | 23.1% |
| 357202 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.50 | 36.0 | 3.69e-01 | 77.1% | 93.9% |